Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0970 ATGGTTCGTCTTCCGACATTGAACACACAGTTCTTCTCGAAGAAGCACGAATGTCTCTTTCTCCTAAACTCGTGTGGTTCTATGGACCAACTCCGTCAAATCCAGGCACAAATCCACCTCTCTGGTCTCTACCAAGACACACACACTCTCTCAGAACTCGTCTACTTTTGCTCCCTCTCTCCCTCCAAGAACCTCCGCCACGCGTGCGCACTCGTGCATGACGCTGCCACCTCATCACCCATTTCGTGGAACATTCTCATCCGAGGCTACGCCGTGAGCGATTACCCCCTTGAAGCCGTCTTGGTATTTCGGAAAATGCGAGAACGTGGCGCCATGCCTAACAAACTCACCTTCCCTTTCCTCATTAAGTCTTGTGCTGTGGCTTCTGCACTTGGTGAAGGGAGACAGGTTCATGCGGACGCTTTTAAGTGTGGTTTGGACTCTGACGTGTACGTTGGTAACAATTTGATTAACTTTTACGGGCGTTGTAAGAAGATTGTGGATGCAATCAAGGTGTTTGATGAAATGCCTGAGAGAACAGTTGTTTCTTGGAACTCCGTTATCACTGCCTGTGTTGAGAGTCTTTGGTTGGGTGAGGGGATTGTGTATTTTTTCAGGATGTGGGATGGTGGGTTTGAGCCTGATGAGACTTCCATGGTGTTGTTACTCTCTGCTTGTGCTGAGTTGGGGTACTTGAGTTTGGGAAGATGGGCTCATTCTCAATTGGTTTTGAGAGGGATGGTTCTGAGTGTTCAATTGGGTACTGCTCTTGTTGAAATGTATGGGAAGTCTGGGGCCTTGGGCTATGCAAGGTCTGTTTTTGAGAGAATGGAAAGGAGGAATGTGTGGACATGGAGTGCAATGATATTGGGGTTGGCTCAGCACGGGTTTGCTGAGAAAGCCCTTGCGCTGTTTGCAATGATGAGTAGCAATAACAATCATGATATATGCCCAAATTATGTGACCTATCTTGGGGTTCTTTGTGCTTGTAGCCATGCTGGAATGGTAGATGAGGGTTACCAATATTTTCATGACATGAAATGTGTGCATGGGATCAAGCCCATGATGATGCATTATGGAGTCATGGTTGATGTATTGAGCCGCGCTGGCCGTCTTGAAGAAGCTTATGGGTTTATACAGAGGATGCCTATTGAGCCTGACCCGGTTGTGTGGAGGACATTGCTAAGTGCATGCATTGTACATGATGTTCATGACCATGCAGGGATTGGAGAAAGAGTGAGGAAAAGGTTACTTTGGATGGAGCCAAGGAGGGGGGGGAATTTGGTTATTGTTGCTAACATGTACGCTGAAGGGGGTATGTGGGAGAAAGCAGCAAATGTGAGGAGGGTGATGAGAGATGGAGGAATGAAGAAGATGGCTGGAGAGAGTTGTGTTGACTTAGGTGGCTCCATGCATAGGTTCTTCGCAGGGTATGATCCTTGCCCAGATTTGATGCCTGTGTATCATCTACTCGATGGATTGAACCTGCACTTGAAAATGGTTAACTAA 1509 0.4725 MVRLPTLNTQFFSKKHECLFLLNSCGSMDQLRQIQAQIHLSGLYQDTHTLSELVYFCSLSPSKNLRHACALVHDAATSSPISWNILIRGYAVSDYPLEAVLVFRKMRERGAMPNKLTFPFLIKSCAVASALGEGRQVHADAFKCGLDSDVYVGNNLINFYGRCKKIVDAIKVFDEMPERTVVSWNSVITACVESLWLGEGIVYFFRMWDGGFEPDETSMVLLLSACAELGYLSLGRWAHSQLVLRGMVLSVQLGTALVEMYGKSGALGYARSVFERMERRNVWTWSAMILGLAQHGFAEKALALFAMMSSNNNHDICPNYVTYLGVLCACSHAGMVDEGYQYFHDMKCVHGIKPMMMHYGVMVDVLSRAGRLEEAYGFIQRMPIEPDPVVWRTLLSACIVHDVHDHAGIGERVRKRLLWMEPRRGGNLVIVANMYAEGGMWEKAANVRRVMRDGGMKKMAGESCVDLGGSMHRFFAGYDPCPDLMPVYHLLDGLNLHLKMVN* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0970 502 Pfam PPR repeat 182 211 IPR002885 -
Pvu10g0970 502 Pfam PPR repeat 359 382 IPR002885 -
Pvu10g0970 502 Pfam PPR repeat 255 282 IPR002885 -
Pvu10g0970 502 Pfam PPR repeat 284 312 IPR002885 -
Pvu10g0970 502 Pfam PPR repeat 321 347 IPR002885 -
Pvu10g0970 502 Pfam PPR repeat 154 179 IPR002885 -
Pvu10g0970 502 Gene3D Tetratricopeptide repeat domain 236 312 IPR011990 GO:0005515
Pvu10g0970 502 Gene3D Tetratricopeptide repeat domain 13 134 IPR011990 GO:0005515
Pvu10g0970 502 Gene3D Tetratricopeptide repeat domain 135 233 IPR011990 GO:0005515
Pvu10g0970 502 PANTHER OS09G0412900 PROTEIN 11 502 - -
Pvu10g0970 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Pvu10g0970 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Pvu10g0970 502 Pfam E motif 407 465 IPR046848 -
Pvu10g0970 502 Pfam PPR repeat family 81 126 IPR002885 -
Pvu10g0970 502 Gene3D Tetratricopeptide repeat domain 313 468 IPR011990 GO:0005515
Pvu10g0970 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Pvu10g0970 502 TIGRFAM PPR: pentatricopeptide repeat domain 154 179 IPR002885 -
Pvu10g0970 502 TIGRFAM PPR: pentatricopeptide repeat domain 321 354 IPR002885 -
Pvu10g0970 502 TIGRFAM PPR: pentatricopeptide repeat domain 182 216 IPR002885 -
Pvu10g0970 502 TIGRFAM PPR: pentatricopeptide repeat domain 284 312 IPR002885 -
Pvu10g0970 502 TIGRFAM PPR: pentatricopeptide repeat domain 81 114 IPR002885 -
Pvu10g0970 502 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 11 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0970 Pvu-Chr10 34367338 34368846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0970 11 499 Glycoside Hydrolase AT3G49170 33.065 3.61e-83 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0970 - - gmx:100787179 891.338