Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0944 ATGGCCACGCCGGAAGCCGTCGCAGCCTTCAGGCGCATCACCGGAGCACCGGAGTTCGTCGCCGTGCAGAAATTAGAGGCATATGGGGGCAATCTAAATGAAGCTATTAATGCCCATTTTCTTGAAGGGGATAGACACATATTATCAGGTCAAGGGCAAAATCTTGCTGCTGCCCCACAACATAATAACATAGGTGCAAGTAATCAAAACCGTGGCGGTGGATCAAATGGAATTTTGCCTCTTCTCAATGCTGCTAGAAGATTTCGACCTTCACTTTTACTTGACTCAAATTATAGGAGAGAACTTAGAGATCTATATAAGGGGATTGGTGATGGTGGTGCTACTGCATATACTAATCGCCCACCGCCTGCATGGACCAATAGTCCATTTGAGCCGCATTATCAATCAGGATTGAGCTCTACAGAGGAAGCAATGCTTCAGGCAGCTATAGAGGCCTCGAAAATGGAGAGAAGAGGAGGTTCTTCATGGGAGCGAATTGATGTTCTCAATGATTCATCTGATGGTGGGCTTCCTCAAACTCTTGTTCAGCAAGAAGATGATGATTTGGCCCGTGCAATTGCGTCATCCTTAGAGACCGCAGAGCAAGAGAAAACCACACGTCAGCTTTTAGTAAAAGAGGAAAAGGAAGGGCAACTTGGAGTTCACTTTTCATTAGACAAGGAAAAGAAAACTAACAGTAGCAGAAACCAATTAGAGTTAGGAACATCATCTGATCAAAATGTAGCTCAAGATGTTGCACCACCAGTCATCGGTCATTTGTCAAATAACAGAGCTGGTGGTCGTAGTCAACATAATGAAGATGTGTTTCTTGCTAAGAAGTGGGGTGGTATTTCTGCTGAAGAGATTAATGAAGCATTGTTAGTTGAAACTTCACTTTTTGGTGAAATTTCCACTCACAGTTTTCCATCATTGCCTAATATACAACATCGTCCAGAAGAAAATATGGATCCCAAGACGCAGGACATGTCCACTTCTATGTCACAATTATTAATTAACACTCGGTTGCTGAAACAACAACAGGATGCGGACTATCTAGCATCACTACAAGCTGATAAACAAAAGGAATTGAATTCTTTCAATAAAACTGAAAGCCATTCCTCACAGGAAGAAGAATCATGCAAAAAGATGCTTGAAAAAAAGGAATTAGTGAAAAAGCTTGACACGAAAGAACTTAGGCTTTCCAAGGAACCACTATTGTCTGATGAAGTAATTACTATTGTTGTTCGAATGCCAGATGGTGGTCGCTGTGAACGTCGCTTCCTCAAAACTGACAAACTAGAGCTTCTTTTTGAGTTCATAGACGCATGTGGAGCACAGAAGCCTGGAACCTATAGATTTGTGAGGTCATACCCGCGTCGTGCTTACAGTATTAACGATTGCTTGTCAACCTTCAATGAAGTAGGCCTTAACAAAAGTAATGAAGCTTTGTTTCTGGAGTTGATTTAG 1467 0.4213 MATPEAVAAFRRITGAPEFVAVQKLEAYGGNLNEAINAHFLEGDRHILSGQGQNLAAAPQHNNIGASNQNRGGGSNGILPLLNAARRFRPSLLLDSNYRRELRDLYKGIGDGGATAYTNRPPPAWTNSPFEPHYQSGLSSTEEAMLQAAIEASKMERRGGSSWERIDVLNDSSDGGLPQTLVQQEDDDLARAIASSLETAEQEKTTRQLLVKEEKEGQLGVHFSLDKEKKTNSSRNQLELGTSSDQNVAQDVAPPVIGHLSNNRAGGRSQHNEDVFLAKKWGGISAEEINEALLVETSLFGEISTHSFPSLPNIQHRPEENMDPKTQDMSTSMSQLLINTRLLKQQQDADYLASLQADKQKELNSFNKTESHSSQEEESCKKMLEKKELVKKLDTKELRLSKEPLLSDEVITIVVRMPDGGRCERRFLKTDKLELLFEFIDACGAQKPGTYRFVRSYPRRAYSINDCLSTFNEVGLNKSNEALFLELI* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0944 488 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 184 203 IPR003903 -
Pvu10g0944 488 PANTHER FAS-ASSOCIATED PROTEIN 3 103 - -
Pvu10g0944 488 PANTHER FAS-ASSOCIATED PROTEIN 142 488 - -
Pvu10g0944 488 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 9 ISOFORM X1 3 103 - -
Pvu10g0944 488 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 9 ISOFORM X1 142 488 - -
Pvu10g0944 488 Pfam UBX domain 409 486 IPR001012 GO:0005515
Pvu10g0944 488 Pfam UBA-like domain 5 44 - -
Pvu10g0944 488 CDD UBA_Ubx1_like 4 40 - -
Pvu10g0944 488 SMART uim 141 160 IPR003903 -
Pvu10g0944 488 SMART uim 184 203 IPR003903 -
Pvu10g0944 488 MobiDBLite consensus disorder prediction 226 246 - -
Pvu10g0944 488 Gene3D - 407 487 - -
Pvu10g0944 488 ProSiteProfiles UBX domain profile. 406 484 IPR001012 GO:0005515
Pvu10g0944 488 SUPERFAMILY Ubiquitin-like 380 480 IPR029071 -
Pvu10g0944 488 SMART ubx_3 402 487 IPR001012 GO:0005515
Pvu10g0944 488 Pfam Ubiquitin interaction motif 141 153 IPR003903 -
Pvu10g0944 488 Pfam Ubiquitin interaction motif 184 199 IPR003903 -
Pvu10g0944 488 CDD UBX 412 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0944 Pvu-Chr10 33548241 33555621 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0944 - K18726 gmx:100795740 443.351