Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0899 ATGGGTTTGTTTTCTGGGATTTTCATGGGGGTGGTGTTCGGCATCGCATTGATGGCTGGATGGGCGCGCATGATGAGGTACCGAAGCGCCAAAAGAGTTGCAAAGGCAGCTGACGTTAAACTCCTTGCATCCCTTAACAGAGATGATTTAAAGAAAATTTGTGGTGACAATTTGCCTGAGTGGATATCATTTCCTGTATATGAACAGGTGAAATGGCTAAACAAGAAACTGAATAAACTTTGGCCATTTGTGGCAGAAGCCGCAACTTTGGTGATCAAAGAATCTGTCGAACCACTGCTAGAAGAGTACAGACCTACTGGAATTTCTTCATTGAAGTTCAGCAAACTCTCACTTGGAAATGTGGCCCCAAAAATTGAAGGTATTCGTGTTCAGAGCCTTACCAAAGGTCAAATCATAATGGATATTGATTTCCGTTGGGGTGGTGATCCTAGTATTATTTTGGCTGTTGAGGCTGCACTTGTTTCAATCCCTATTCAGTTGAAGGATCTACAGGTTTTCACCATTATCCGTGTTATATTCCAACTTGCTGAAGAGATCCCTTGCATTTCTGCTGGTGTTGTAGCTCTACTTGCTGAGCCACAGCCAAGGATTGATTATACCCTGAAAGCTGTTGGTGGAAGTTTAACAGCTATTCCTGGAATCTCAGATATGATTGATGATACTGTGAAATCAATTGTTACTGATATGCTCCAATGGCCTCATAGGATTGTGTTTCAAGTTGGTGGTATTCCTGTTGATATCAGTGATCTGGAGCTTAAACCCCAGGGAAAACTTTCAGTGACTGTAGTGAAAGCCACTGCTTTGAAGAATATGGAAATGATTGGAAAGTCAGATCCTTATGTAGTCGTGTATATTCGACCATTGTTCAAGTATAAAACCAAAGTTGTTGATAACAACTTGAATCCTACTTGGAATGAGAGATTTGAGTTGATTGCAGAAGACAAGGAGACCCAATCACTCATTCTTGAGGTTCTTGATAAAGATATTGGTCAAGATAAGCGATTGGGAATAGTACAGGTACCCCTTAATGATCTAGAAATACAAACTGAAAAGGAGATCGAGTTGAGGCTGCTACCATCACTTGATAGATTGAAGGTGAAAGATAAGAAGGATCGAGGAACCTTGACAGTAAAGGTTTTATACTATCAGTTTAACAAGGAAGAACAATTGGCTGCACTAGAAGCAGAGAAAAAGATACTAGAAGAAAGGAAGAAACTGAAAGAAGCAGGAGTGATAGGAAGCACAATGGATGCACTAGACGGAGCAGTATCAGTGGTAGGATCTGGTGTTGGACTGGTTGGTACTGGTGTTGGATTGGTTGGTACTGGTGTTGTCAGTGGCATTGGTGCTGGAGCAGGGCTAGTTGGCAGTGGTTTTGGAGCAGTTACCAGTGGATTGAGCAAGGCAGGGAAGTTCATGGGAAGGACAATCACAGGGCATAGTGGCTCCAGAAAGAGTGGCTCTTCAACTCCAGTCAATAATGCACAGGAGAATGGTGGTGGTGCAAAGCCTCTTTGA 1539 0.4243 MGLFSGIFMGVVFGIALMAGWARMMRYRSAKRVAKAADVKLLASLNRDDLKKICGDNLPEWISFPVYEQVKWLNKKLNKLWPFVAEAATLVIKESVEPLLEEYRPTGISSLKFSKLSLGNVAPKIEGIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAALVSIPIQLKDLQVFTIIRVIFQLAEEIPCISAGVVALLAEPQPRIDYTLKAVGGSLTAIPGISDMIDDTVKSIVTDMLQWPHRIVFQVGGIPVDISDLELKPQGKLSVTVVKATALKNMEMIGKSDPYVVVYIRPLFKYKTKVVDNNLNPTWNERFELIAEDKETQSLILEVLDKDIGQDKRLGIVQVPLNDLEIQTEKEIELRLLPSLDRLKVKDKKDRGTLTVKVLYYQFNKEEQLAALEAEKKILEERKKLKEAGVIGSTMDALDGAVSVVGSGVGLVGTGVGLVGTGVVSGIGAGAGLVGSGFGAVTSGLSKAGKFMGRTITGHSGSRKSGSSTPVNNAQENGGGAKPL* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0899 512 ProSiteProfiles C2 domain profile. 246 364 IPR000008 -
Pvu10g0899 512 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 507 - -
Pvu10g0899 512 Gene3D C2 domain 258 417 IPR035892 -
Pvu10g0899 512 PRINTS C2 domain signature 280 292 IPR000008 -
Pvu10g0899 512 PRINTS C2 domain signature 305 318 IPR000008 -
Pvu10g0899 512 PRINTS C2 domain signature 327 335 IPR000008 -
Pvu10g0899 512 CDD C2 265 359 - -
Pvu10g0899 512 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 244 IPR039010 -
Pvu10g0899 512 Coils Coil 390 417 - -
Pvu10g0899 512 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 248 IPR031468 GO:0008289
Pvu10g0899 512 SMART C2_3c 264 361 IPR000008 -
Pvu10g0899 512 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 261 391 IPR035892 -
Pvu10g0899 512 MobiDBLite consensus disorder prediction 484 512 - -
Pvu10g0899 512 Pfam C2 domain 263 359 IPR000008 -
Pvu10g0899 512 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 507 IPR045050 GO:0008289
Pvu10g0899 512 MobiDBLite consensus disorder prediction 486 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0899 Pvu-Chr10 32116005 32128115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0899 248 352 Lipid Metabolism Gene Families AT3G61300 33.962 9.91e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0899 - - gmx:100777838 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0899 10 32116005 32128115 Pvu10g0899 10 32116005 32128115 ECH
Pvu8g0751 8 6961228 6969926 Pvu10g0899 10 32116005 32128115 PCT