Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0886 ATGTTGCAACCCTTCACTACTTTCTTCACCTTTCTTCATAGTAAAACCAAATCCATCCTCAACCAACCAAGAATCATGATGAGTGCATGCTACAAAGGAAACCGACCCAAGAGAAAATTCTCTTCAGGTTCGGACTTGTCAATCTCTTCTTTCCTTCACATGGAGCTGTCCACTCAGTTTCATCAAGTTTTCAAGCTGATTGACTCTAATGGGGATGGGAAGATCTCAACCACTGAGCTGAGTGAAGTGCTTGCATGCCTTGGATACAGCAAGTGCACTGCTGCCAAGGAAGCTGAAGGCATGGTGAGAGTGTTGGACTTCAATGGAGATGGGTTTGTGGACTTGGATGAGTTCATGGTTGTCATGAATGGCATGGAAAAGGAAGAGGAAAAGGAAGAAGAAGAAGAAGAAGAAGACAAGATTGATGGTTACCTCATGGATGCTTTTCTTGTCTTTGATACTGACAAGAATGGCCTCATTTCAGCCAAGGAACTGCAGAGAGTTCTGTTCAATCTAGGGTGTGAAAACTGCAGTCTCAGAGAGTGCAAACGTATGATCAAAGGTGTTGATAAGAATGGAGATGGTTTTGTAGATTTTCAAGAATTTCGATCCATGATGCAAAGTGGACTTGCAAGTTAG 639 0.4272 MLQPFTTFFTFLHSKTKSILNQPRIMMSACYKGNRPKRKFSSGSDLSISSFLHMELSTQFHQVFKLIDSNGDGKISTTELSEVLACLGYSKCTAAKEAEGMVRVLDFNGDGFVDLDEFMVVMNGMEKEEEKEEEEEEEDKIDGYLMDAFLVFDTDKNGLISAKELQRVLFNLGCENCSLRECKRMIKGVDKNGDGFVDFQEFRSMMQSGLAS* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0886 212 SMART efh_1 144 172 IPR002048 GO:0005509
Pvu10g0886 212 SMART efh_1 181 209 IPR002048 GO:0005509
Pvu10g0886 212 SMART efh_1 59 87 IPR002048 GO:0005509
Pvu10g0886 212 SMART efh_1 97 125 IPR002048 GO:0005509
Pvu10g0886 212 Pfam EF-hand domain pair 59 122 IPR002048 GO:0005509
Pvu10g0886 212 Pfam EF-hand domain pair 145 207 IPR002048 GO:0005509
Pvu10g0886 212 ProSiteProfiles EF-hand calcium-binding domain profile. 93 128 IPR002048 GO:0005509
Pvu10g0886 212 ProSiteProfiles EF-hand calcium-binding domain profile. 55 90 IPR002048 GO:0005509
Pvu10g0886 212 ProSitePatterns EF-hand calcium-binding domain. 153 165 IPR018247 -
Pvu10g0886 212 PANTHER CALCIUM-BINDING PROTEIN CML25-RELATED 49 209 - -
Pvu10g0886 212 ProSiteProfiles EF-hand calcium-binding domain profile. 140 175 IPR002048 GO:0005509
Pvu10g0886 212 CDD EFh 144 207 IPR002048 GO:0005509
Pvu10g0886 212 ProSitePatterns EF-hand calcium-binding domain. 106 118 IPR018247 -
Pvu10g0886 212 Coils Coil 115 147 - -
Pvu10g0886 212 CDD EFh 59 122 IPR002048 GO:0005509
Pvu10g0886 212 PANTHER CALCIUM BINDING PROTEIN 49 209 - -
Pvu10g0886 212 Gene3D - 8 144 - -
Pvu10g0886 212 ProSitePatterns EF-hand calcium-binding domain. 68 80 IPR018247 -
Pvu10g0886 212 SUPERFAMILY EF-hand 51 208 IPR011992 -
Pvu10g0886 212 Gene3D - 145 209 - -
Pvu10g0886 212 ProSitePatterns EF-hand calcium-binding domain. 190 202 IPR018247 -
Pvu10g0886 212 ProSiteProfiles EF-hand calcium-binding domain profile. 177 212 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0886 Pvu-Chr10 31707286 31708492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0886 149 210 EF-hand Containing Proteins AT1G24620 35.484 5.12e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0886 - - gmx:100779339 334.724