Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0878 ATGTCGTTTTCCGATTCCGAATACGGCGGAACATCGGAGTACAAGCCGTTCCGCCAAATCAGCCGCGACCGGTTATTATTTGAAATGCTTAGATCGGCAAAGTCACCCGACTCGAAGGCATGGAAGGTGCTCATAATGGATAAAGTCACTGTGAAAGTTATGTCACATTCGTGTAAAATGGCAGATATTACAGACCAAGAAATTTCCTTGGTGGAAGACCTCTTTCGGAGAAGGCAACCGTTACCATCTTTGGATGCTATTTATTTCATGCAACCTTCTAAAGAGAATGTGGTCATGTTCCTGTCTGATATGTCTGGAAGGGAGCCCCTGTATAAGAAAGCCTATATATTTTTCAGTTCACCGATCCCAAAGGAACTTGTAAACCACATCAAGTGTGATACAAGTGTCTTACCCCGCATAGGAGCATTGAGAGAGATGAATTTGGAATATTTTCCAGTAGATAGCCAGGGGTTTACTACTGATCAAGAAACAGCAATGGACGATCTTTATGGCAACATTGAGAATACTCGCAGATTTAACACCTGCATGAATAGTATGGCTATTCGAATAGCTACAGTTTTTGCTTCATTAAAGGAGTTACCATGTGTGTGGTATCGTGCTGCAAAGGATAGTGGCGAGTCTACTGGAACAGCAGTTCGAGAATTAGTTCCTACCTACCTTACTAGTGCTGTTTGGGACTTGGTTTCTAAATATAAATCTACCATTCCCGGTTTTCCACAAAATGAAACTTGTGATCTTCTCATTGTTGACAGATCCGTAGATCAGATTGCTCCTGTCATTCATGAATGGACGTATGATGCTATGTGCCATGATTTGTTGAATATGAATGGAGATAAATATATGCATGAGATTCCCAGCAAAACCGGGGGTGATCCTGAGATGAAGGAGGTCCTTCTACAAGATCATGATCCAGTCTGGCTTGAACTTCGCCACGCTCATATAGCAGATGCTAGTGAAAGACTGCATGACAAGTTTACCAATTTCGTATCAAAGAACAAAGCAGCACAAATTCAACAAAGGGGAAGAGATGGTAGCGAATTATCTACACGAGATTTGCAGAAAATGGTTCAGGCATTGCCACAATACACTGAGCAAGTGGAAAAGATTTCACTCCATGTGGAGATAGCTGGAAAGATCAACACAATTATCAGAGAAACAGACCTTAGAGAGCTTGGACAGTTGGAACAAGATCTTGTTTTTGGGGATGCAGGAGCGAAGGAAGTTATTAACTTTTTAAGAACAAAGCAGAGTACAACTCCTGAATATAAGTTGCGTTTGTTGATGATTTATGCAATTGTCTATCCTGAAAAGTTTGAGGGTGATAAAGCTTCAAAGCTAATGCAGTTGGCAAAACTATCACCTGATGACATGAAAGTTATCAGTAACATGCAACTGCTGGCGGGATCATCAAACAAGAAATCATCTACTGGTGGAGAAGGCGGTTTCTCACTCAAGTTCAGTAACCAGAAGACAAAGCATGCAGCTCGCAAAGATCGAGCTGATGAAGAGGAAGAAACGTGGCAACTATTTCGATTTTTTCCCATGTTAGAGGAGCTCATCGAAAATCTCAATAAGGATAAATTGCCCAAGAATGAATATTCGTGTAAAAACGAGCCAAGTCAAAGTAGTGCCCAAGGGGGTTCAGCAAAAGACAGCAAAAAGGCAGCAGCAGCCCCAACAACTTCTCTTCCTTCAAATAGATCTAGGAGGACAGCAAACTGGGGAAGATCTCGTACTACTTCAGATGATGGATATTCAAGTGACTCCACGTTGAAGAATTGGACTACTGATCCCAAGAAGATGGGAAAGCGAATCTTTGTGTTTATTATTGGCGGGGCTACTCGATCCGAGCTGCGAGTTTGTCACAAGTTGACAACAAAATTAAAAAGGGAAGTAATCCTAGGTACTACATCCATGGATGATCCTCCACAATATCTTACGAAATTAAAGTTATTGGGAGACAATGTTGCACCACCCATGGATGGCCTCGGCATATAA 2019 0.4175 MSFSDSEYGGTSEYKPFRQISRDRLLFEMLRSAKSPDSKAWKVLIMDKVTVKVMSHSCKMADITDQEISLVEDLFRRRQPLPSLDAIYFMQPSKENVVMFLSDMSGREPLYKKAYIFFSSPIPKELVNHIKCDTSVLPRIGALREMNLEYFPVDSQGFTTDQETAMDDLYGNIENTRRFNTCMNSMAIRIATVFASLKELPCVWYRAAKDSGESTGTAVRELVPTYLTSAVWDLVSKYKSTIPGFPQNETCDLLIVDRSVDQIAPVIHEWTYDAMCHDLLNMNGDKYMHEIPSKTGGDPEMKEVLLQDHDPVWLELRHAHIADASERLHDKFTNFVSKNKAAQIQQRGRDGSELSTRDLQKMVQALPQYTEQVEKISLHVEIAGKINTIIRETDLRELGQLEQDLVFGDAGAKEVINFLRTKQSTTPEYKLRLLMIYAIVYPEKFEGDKASKLMQLAKLSPDDMKVISNMQLLAGSSNKKSSTGGEGGFSLKFSNQKTKHAARKDRADEEEETWQLFRFFPMLEELIENLNKDKLPKNEYSCKNEPSQSSAQGGSAKDSKKAAAAPTTSLPSNRSRRTANWGRSRTTSDDGYSSDSTLKNWTTDPKKMGKRIFVFIIGGATRSELRVCHKLTTKLKREVILGTTSMDDPPQYLTKLKLLGDNVAPPMDGLGI* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0878 672 Gene3D - 10 145 IPR043154 -
Pvu10g0878 672 PANTHER PROTEIN TRANSPORT SEC1A 18 659 - -
Pvu10g0878 672 Gene3D - 518 641 IPR027482 -
Pvu10g0878 672 Pfam Sec1 family 42 653 IPR001619 GO:0016192
Pvu10g0878 672 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 18 659 IPR001619 GO:0016192
Pvu10g0878 672 MobiDBLite consensus disorder prediction 476 496 - -
Pvu10g0878 672 Gene3D - 150 273 IPR027482 -
Pvu10g0878 672 SUPERFAMILY Sec1/munc18-like (SM) proteins 17 662 IPR036045 -
Pvu10g0878 672 Gene3D - 394 517 - -
Pvu10g0878 672 MobiDBLite consensus disorder prediction 565 601 - -
Pvu10g0878 672 MobiDBLite consensus disorder prediction 536 601 - -
Pvu10g0878 672 MobiDBLite consensus disorder prediction 476 507 - -
Pvu10g0878 672 PIRSF VPS45_Sec1 12 664 IPR001619 GO:0016192
Pvu10g0878 672 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 274 390 IPR043127 -
Pvu10g0878 672 MobiDBLite consensus disorder prediction 541 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0878 Pvu-Chr10 31457207 31479189 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0878 K15292 - gmx:100783301 1140.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0878 10 31457207 31479189 Pvu10g0878 10 31457207 31479189 ECH