Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0877 ATGGAAACTTGGGTAAGCTCTGGAGATGTTACTGAAATCAATCCTCAAAGTTTGGGAGATGGTGATAGTAATGCATTTATTTTGCCTGCGAAGAGGATGAAGAAAAAGAAAGGGAAGGAACAGCATCATGGAAAAACTCAATCAAATAAGAAACAGAAATTGAGCAAACCTCAGAAGAGGAAGAGGAAGTTTGAGGATGACAGGGATAAACAACTTCTGCAGGAAAAAGCTATTAAGACAATGAACGAGAACACACTTCCAGAGTATGCATATCATCTTTTGCAGTCCTCATGCAATATAAATCGGAACGAGACTATGAAGGAAAAGCGTAGGAGGACTGTTCATTTATTGAAAGAAGGATTGAAGGTTTCATATAATGGGTTGTCTAAGAAACCTCTGATGGACGAGATTCATTTAGCACAAGATGATGAATTCGAAGAAAATGACATTCAAATTCAACCCATTAGATCTGAAGAAGTCTTAAATACAACCTCAACATCTTTGGAGTCCTCTGAAGAACTGGTTCATGGCAATGAGGTTGAAGATTATAAATGTGTTTCTGAAAATCCTGCTGATATTTCCACTGTCAAACAACTTTATGAAATCAGAAGTTCTCCGTTGTCTTGTTCGATTGATGAAATAGAAAACTCCAATTTAAAGGATAGAACAGATGAGAATCATAACTCCAATGAATTGAACAACCTTCTTGATTCTTCTGCACCAAGGCCTTCAAATGTTCCTACTGTTGTGCATGTATATAGACCAAGTGAAGTTGAAGACAAAAGAAAGGATTTGCCTATAGTTATGATGGAGCAAGAGATAATGGAAGCTATAAATGACTGTTCCAGCGTTATCATATGTGGAGAAACTGGGTGTGGTAAAACAACTCAAGTTCCTCAGTTTCTTTTTGAAGCTGGTTACGGTTCAAGTAAGGGTATCATTGGTGTTACTCAACCACGTCGAGTGGCTGTTCTTGCAACAGCTAAGCGTGTGGCATATGAGCTTGGGCTTCATTTAGGGAAGGGGGTTGGTTTTCAAGTCAGATACGACAAGAAGATTGGTGAAAATTGTTCTATCAAGTTTATGACTGATGGAATTTTGCTACGAGAAGTTCAGAATGATATTTTGTTGAGACGTTATTCTGTCTTAATTCTTGATGAGGCCCATGAGAGGAGCTTGAACACGGACATTTTGATTGGGATGCTCTCACGTGTAATTAAAACTCGCCAAATGATTTATAATGAACAACAGAAGATGATACTTTCAGGAGAAATTATAAGTCCTGAAAAAATAATTTTTCCATTAAAACTTGTGCTTATGAGTGCCACCTTGCGAGTACAAGACTTCACTTCTGGGAAGTTATTCCATACTGCTCCACCTGTGATAGAAGTTCCTACGAGGCAATTTCCAGTAGCAGTATACTTCTCAAAGAAAACAGAGAAAACAGATTACATTGGAGAAGCATATAAGAAGGTCTTGGCAATTCACAAGAGGTTGCCATCTGGGGGCATACTTGTCTTTGTTACTGGGCAAAGGGAAGTAGAGGACTTGTGCAGGAAATTACGGAAAGCATCAAGGGAGTTTATCAAGAAAAAAGTTGAAGGGTCTGTGCAAACTGCTAGCACTGTGGTCAATGAAACAAACTCTGTTGAGGGAGTAAATATTAGCGAGATCAATGAAGCATTTGAGGTTCATGGAAGTTCATCCATCCAGCAAACTGATAGATTTAGTGGTTATGATGAAGATGAGGATAATGCAAATGAGAATGAATCTGATTTTTCTTATGACACTGAAACAGAGAGTGAACTGGAATTTGATGATGATAATCTTGAGCTTCCGGAGAACAATAGTAATATTGTGGATGCCTTAGGACAGGCGGGAAGTCTTGCTTCACTAAAGGCTGCTTTTGAAAAATTGTCTTGGCAAGCCGCATTAAGCTCCTCAAATGAACAGAAGACATTTCTTGCTAACACAGAAGGTAATTTAGACCAATCAAAAGTTCTCAGGGAGAAAAAAACAAAAGAAAATTGCAGTCCTCCAGGTGCACTCTGTGTTCTACCTCTGTATGCCATGCTTCCTGCAGCAGCTCAACTTTGTGTATTTGAAGAAGTTGGGGAGGGAGAGCGGCTTGTAGTTGTTGCAACAAATGTTGCTGAAACATCTTTAACCATCCCAGGGATAAAGTATGTGGTTGATACTGGAAGAGAAAAGGTGAAGAATTATGACCCCTCTAATGGCATGGAGACATACGAAATACAATGGATAAGTAAGGCATCTGCTGCACAGCGTGCAGGCAGATCAGGAAGAACTGGACCTGGACACTGTTACCGTCTCTATTCTTCTGCAGCCTTTAATAATGAATTTCCTGAGCACTCTCCTGCAGAAGTTGAGAAAGTACCTGTTCATGGTGTTGTCCTTCTCTTGAAATCCATGCATATTAAAAAGGTTGCAAACTTCCCATTTCCTACTTCTCTTAAAGCTGCTTCTTTGCTCGAAGCTGAAAATTGCTTGAAATCTCTTGAAGCACTTGATAGCAAGGATGAACTTACGCTGTTGGGAAAAGCCATGGCACATTATCCCTTGAGTCCTCGTCATTCTAGAATGCTCCTGACTGTTATTAAAAATACGAGACATGAGCTTAAACGTAATTCAAATTTGCTTTTGGCATATGCTGTTGCAGCTGCTGCAGCGTTGAGCTTGTCAAATCCTTTTATAATGCAATATGAAGATGATAACAGCAGAGATTCAAATATTTCTGAGAAATCTAGAATGGGAGATGGTGAGAAAGACTTTGATAAAAAGGGAAAGTCAAGCAGAAAGAAACTAAAAGCAACAGCGAAAGTTGCCCGCGAGAAATTTCGAGTTATCACAAGTGATGCCCTCACCATAGCTTATGCTTTACAGTGTTTTGAACATTCACAGAAATCAGTAGAATTCTGTGATGACTATGCATTGCATTTCAAAACCATGGATGAAATGTCCAAACTTCGGCAACAGCTACTTAAACTGGTCTTTCATCAGAGTGATAAAGGTGGTCTTGAAGAAGAGTACTCATGGATCCATGGAACATTAGAGGATGTTGAGTGTGCATGGCAGGTTTCTTCTGAAAAGTACCCACTTTCTCTTGTTGAGGAAAGGCTTATCTGTCAAGCAATATGTGCTGGCTGGGCAGATAGGGTTGCTAAACGTATTACATCTTTCTCTAGGGCCTCCGATGGAGAGAAATCCTCCCGTGCTTTAAGGTATCAATCATGCATGGTTGATGAGAGTGTTTTACTTCATCGTTGGTCATCACTTTCCACTGTAGGCCCTGAGTATGTGGTCTACAATGAACTATTAGAGACCAAAAGACCAAATAAAGAAGGGATAACAAGTACGAGAGCATATATGCATGGAGTAACAAGTGTTGAGCCCGCTTGGCTTGTTGAGCATGCAAAGTCTTCATGCGTCTTCTCTACTCCCCTGAAGGATCCTAGACCTTATTATGATGCTCAGACTGACCAAGTAAAATGTTGGGTAACCCCAACCTTTGGCCGTTTCTCTTGGAAGTTTCCAATGCATTCATTGCCAATTAGCAATGATGAAGATCGGGTGCAAGTGTTTGCCTATGCTTTGCTTGAAGGCCAGGTGTGTCCCTGTTTAAGATCTGTTCGAAAATATATGTCAGCTCCCCCTGAAAGTATCATGAAGAAAGAAGCATTTGGTCAGAAAAGGGTTGGAAACCTTTTAAGCAAGTTAAATAGCAGGTTGATTGATTCCTCTGCTGTGCTAAGAATGGTGTGGAAGGAGAATCCAAGGGAACTATTTCCAGAAATTTTGGATTGGTTTCAGCAGAGTTTTCACCGGCGCTTTGAAGCTTTATGGTCAGAAATGCTTAACGAACTGCTTATGGAGACACAAGAAGGCCCTCAGCATAAAAGTTCTAGAAAAAAGAAAGTAAAATCTAAAGCACTATCATAA 3960 0.3992 METWVSSGDVTEINPQSLGDGDSNAFILPAKRMKKKKGKEQHHGKTQSNKKQKLSKPQKRKRKFEDDRDKQLLQEKAIKTMNENTLPEYAYHLLQSSCNINRNETMKEKRRRTVHLLKEGLKVSYNGLSKKPLMDEIHLAQDDEFEENDIQIQPIRSEEVLNTTSTSLESSEELVHGNEVEDYKCVSENPADISTVKQLYEIRSSPLSCSIDEIENSNLKDRTDENHNSNELNNLLDSSAPRPSNVPTVVHVYRPSEVEDKRKDLPIVMMEQEIMEAINDCSSVIICGETGCGKTTQVPQFLFEAGYGSSKGIIGVTQPRRVAVLATAKRVAYELGLHLGKGVGFQVRYDKKIGENCSIKFMTDGILLREVQNDILLRRYSVLILDEAHERSLNTDILIGMLSRVIKTRQMIYNEQQKMILSGEIISPEKIIFPLKLVLMSATLRVQDFTSGKLFHTAPPVIEVPTRQFPVAVYFSKKTEKTDYIGEAYKKVLAIHKRLPSGGILVFVTGQREVEDLCRKLRKASREFIKKKVEGSVQTASTVVNETNSVEGVNISEINEAFEVHGSSSIQQTDRFSGYDEDEDNANENESDFSYDTETESELEFDDDNLELPENNSNIVDALGQAGSLASLKAAFEKLSWQAALSSSNEQKTFLANTEGNLDQSKVLREKKTKENCSPPGALCVLPLYAMLPAAAQLCVFEEVGEGERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYDPSNGMETYEIQWISKASAAQRAGRSGRTGPGHCYRLYSSAAFNNEFPEHSPAEVEKVPVHGVVLLLKSMHIKKVANFPFPTSLKAASLLEAENCLKSLEALDSKDELTLLGKAMAHYPLSPRHSRMLLTVIKNTRHELKRNSNLLLAYAVAAAAALSLSNPFIMQYEDDNSRDSNISEKSRMGDGEKDFDKKGKSSRKKLKATAKVAREKFRVITSDALTIAYALQCFEHSQKSVEFCDDYALHFKTMDEMSKLRQQLLKLVFHQSDKGGLEEEYSWIHGTLEDVECAWQVSSEKYPLSLVEERLICQAICAGWADRVAKRITSFSRASDGEKSSRALRYQSCMVDESVLLHRWSSLSTVGPEYVVYNELLETKRPNKEGITSTRAYMHGVTSVEPAWLVEHAKSSCVFSTPLKDPRPYYDAQTDQVKCWVTPTFGRFSWKFPMHSLPISNDEDRVQVFAYALLEGQVCPCLRSVRKYMSAPPESIMKKEAFGQKRVGNLLSKLNSRLIDSSAVLRMVWKENPRELFPEILDWFQQSFHRRFEALWSEMLNELLMETQEGPQHKSSRKKKVKSKALS* 1320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0877 1319 SMART helicmild6 662 771 IPR001650 -
Pvu10g0877 1319 CDD DEXHc_DHX37 265 464 - -
Pvu10g0877 1319 CDD SF2_C_RHA 665 779 - -
Pvu10g0877 1319 Gene3D - 822 926 - -
Pvu10g0877 1319 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1048 1146 IPR011709 -
Pvu10g0877 1319 Gene3D - 468 575 IPR027417 -
Pvu10g0877 1319 Gene3D - 630 792 IPR027417 -
Pvu10g0877 1319 MobiDBLite consensus disorder prediction 913 936 - -
Pvu10g0877 1319 MobiDBLite consensus disorder prediction 218 243 - -
Pvu10g0877 1319 MobiDBLite consensus disorder prediction 1 21 - -
Pvu10g0877 1319 Gene3D - 211 467 IPR027417 -
Pvu10g0877 1319 Pfam DEAD/DEAH box helicase 272 448 IPR011545 GO:0003676|GO:0005524
Pvu10g0877 1319 MobiDBLite consensus disorder prediction 229 243 - -
Pvu10g0877 1319 Pfam Helicase associated domain (HA2) 833 962 IPR007502 GO:0004386
Pvu10g0877 1319 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 275 462 IPR014001 -
Pvu10g0877 1319 PANTHER ATP-DEPENDENT RNA HELICASE 245 1301 - -
Pvu10g0877 1319 PANTHER ATP-DEPENDENT RNA HELICASE 21 126 - -
Pvu10g0877 1319 MobiDBLite consensus disorder prediction 1 70 - -
Pvu10g0877 1319 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 890 IPR027417 -
Pvu10g0877 1319 MobiDBLite consensus disorder prediction 566 598 - -
Pvu10g0877 1319 MobiDBLite consensus disorder prediction 912 936 - -
Pvu10g0877 1319 MobiDBLite consensus disorder prediction 1299 1319 - -
Pvu10g0877 1319 MobiDBLite consensus disorder prediction 583 598 - -
Pvu10g0877 1319 SMART ultradead3 263 474 IPR014001 -
Pvu10g0877 1319 MobiDBLite consensus disorder prediction 30 58 - -
Pvu10g0877 1319 PANTHER - 245 1301 - -
Pvu10g0877 1319 PANTHER - 21 126 - -
Pvu10g0877 1319 Pfam Helicase conserved C-terminal domain 649 771 IPR001650 -
Pvu10g0877 1319 SMART ha2_5 832 964 IPR007502 GO:0004386
Pvu10g0877 1319 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 631 812 IPR001650 -
Pvu10g0877 1319 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 381 390 IPR002464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0877 Pvu-Chr10 31432037 31439081 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0877 K14780 - gmx:100788201 2127.44