Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0843 ATGAAACTTAAGCATGGAATTAGATCGATAGGTAGAGCGGCAAATCATGTTATTAGCCATAATCTGCAGATTATTCATCTTGGGAAACTGGGAAGAGTTGAAGACGCCTTCAGAATCTTCTCTAACATGACCCACAAAAATCTTGTAACATACAATTCCATGATATCCATGTTAGCCAAAAATGCTAGAATCAGTCATGCTAGACAATTGTTTGATAAAATGTCCCCCAAAAACCTTGTTTCTTGGAACTCCATGATTGCTGGATATCTTCACAACACCATGGTTGAAGAAGCCAGTGAGTTGTTTGATGCAATGCCTGAAAGAGACAGTTTTTCATGGGCTTTGATGATAACTTGCTATACACGTAGCGGGAAGCTTGATAAGGCTAGAGAATTGCTTGAGTTGGTTCCTGATAAGCTGGACACTGCATGTTGGAATGCAATGATAGCTGGTTATGCAAAGAAGGGCAAGTTCAATGATGCTGAGAAAGTGTTTGACCAGATGCCGGCAAAGGATTTGGTTTCTTACAACTCAATGTTGGCTGGGTATACACAAAATGGGAAAATGCTTTTAGCATTGCGATTTTTTGAGAAAATGGCGAAGAGGAATGTGGTCTCGTGGAATTTGATGGTGGCTGGATATGTTAACAGTGGTGACCTTAGTTCTGCGAGGCAATTGTTTGAAAATATTCCAAATCCTAATGTTGTCTCCTGGGTTACAATGCTGTGTGGCTTTGCACGATACGGAAAGATTATAGAGGCTAGAAGACTTTTTGACAGGATTCCCAGAAAGAATGTGGTTTCCTGGAATGCAATGATTGCAACCTATGTCCAGGAGTTACAAATAGATGAAGCTGATAAGCTGTTCAAGAAAATGCCACATAAAGATAGTGTCTCATGGACTACAATAATTAATGGGTACATTCGAGTTGGTAAGCTTGATGAAGCACGTGAAGTTTACAATCAGATGCCTTGCAAAGACATTGCAGCAAAAACGGCTTTGATGTATGGATTAATACGAAATGGAAATATAGATGAGGCTAATAAAATGTTTAGTCAAATTCATGCACCTGATGTTATTTGTTGGAACATGATGATTGCAGGCTATTCCCAGAGTGGAAGAATGGATGAAGCTCTCAATTTATTTAGACAAATGCCGGTAAAGAATGTTGTTTCATGGAATACTATGATTTCTGGATATGCTCAGGCAGGACATATGGATAGAGCAACAAAGATCTTTCAGGCCATGAGGGAAAAGAATTTAGTTTCCTGGAATTCTCTTATTGCTGGTTTCCTACAAAATAATCTTTACTCGGATTCTCTTAAGAGTTTGGTTATGATGGGCCAGTTGGGAAATAAACCCGATCAATCAACTTTAGCATGTGGCTTAAGTGCATGTGCTAACCTTGCTGCTTTGCAAGTAGGCAAGCAACTTCACGAATACATTCTGAAGAGCGGTTATATGAATGATTTATTTGTCAACAATGCCCTGATCACTATGTATGCTAAAAGTGGAAGGGTACAAAATGCTGAACAAGTGTTCAGAGACATTGAATGTGTTGATCTTATTTCCTGGAATTCCTTAATTTCGGGTTATGCTTTGAATGGATACGCAAATAAGGCATTCGAAGCCTTTGGTCGGATGTTATCAGATAGAGTGGTTCCAGACGAGGTTACTTTTATTGGGATGTTGTCAGCGTGTAGTCATGTTGGTTTAGCGACTGAGGGTTTGGATATTTTTAAACGTATGATTGAAGATTTTGCCATTGAACCATTGGCTGAACACTACAGCTGCCTTGTTGACTTGTTTGGCCGGGTGGGTAGGCTAGAGGAAGCCTTCAATATTGTGAGGGAGATGAAGGTGCAAGCAAATGCTGGATTATGGGGTTCATTACTTGGGGCTTGTCGTGTACACAAAAACCTTGAACTTGGCATATTTGCCGCCCGGAGACTTTTTGAACTCGAACCTGATAATGCCTCCAATTACATTACCCTGTCAAACATGCATGCTGAGGCTGGCAGATGGAAAGAGGTTGAAAGACTAAGGATGCTGATGAGGGACAAAAGTGCTAGAAAGCAACCTGGTTGCAGCTGGATTGAAGTTCAAAACCAGATACAACATTTTCTGTCACATGATCTGGCGAAGCTGAGACATGAAAATATTCAGATTATATTAAATACTTTAGCTGCACACATGAGGGATAAATGTAACATATCTGACATGGAGTCAGCCTATGACATTTTATGA 2247 0.4001 MKLKHGIRSIGRAANHVISHNLQIIHLGKLGRVEDAFRIFSNMTHKNLVTYNSMISMLAKNARISHARQLFDKMSPKNLVSWNSMIAGYLHNTMVEEASELFDAMPERDSFSWALMITCYTRSGKLDKARELLELVPDKLDTACWNAMIAGYAKKGKFNDAEKVFDQMPAKDLVSYNSMLAGYTQNGKMLLALRFFEKMAKRNVVSWNLMVAGYVNSGDLSSARQLFENIPNPNVVSWVTMLCGFARYGKIIEARRLFDRIPRKNVVSWNAMIATYVQELQIDEADKLFKKMPHKDSVSWTTIINGYIRVGKLDEAREVYNQMPCKDIAAKTALMYGLIRNGNIDEANKMFSQIHAPDVICWNMMIAGYSQSGRMDEALNLFRQMPVKNVVSWNTMISGYAQAGHMDRATKIFQAMREKNLVSWNSLIAGFLQNNLYSDSLKSLVMMGQLGNKPDQSTLACGLSACANLAALQVGKQLHEYILKSGYMNDLFVNNALITMYAKSGRVQNAEQVFRDIECVDLISWNSLISGYALNGYANKAFEAFGRMLSDRVVPDEVTFIGMLSACSHVGLATEGLDIFKRMIEDFAIEPLAEHYSCLVDLFGRVGRLEEAFNIVREMKVQANAGLWGSLLGACRVHKNLELGIFAARRLFELEPDNASNYITLSNMHAEAGRWKEVERLRMLMRDKSARKQPGCSWIEVQNQIQHFLSHDLAKLRHENIQIILNTLAAHMRDKCNISDMESAYDIL* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0843 748 Gene3D Tetratricopeptide repeat domain 245 329 IPR011990 GO:0005515
Pvu10g0843 748 Gene3D Tetratricopeptide repeat domain 473 572 IPR011990 GO:0005515
Pvu10g0843 748 Gene3D Tetratricopeptide repeat domain 330 388 IPR011990 GO:0005515
Pvu10g0843 748 Gene3D Tetratricopeptide repeat domain 389 472 IPR011990 GO:0005515
Pvu10g0843 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 47 81 IPR002885 -
Pvu10g0843 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 109 139 IPR002885 -
Pvu10g0843 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 388 IPR002885 -
Pvu10g0843 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Pvu10g0843 748 SUPERFAMILY TPR-like 38 168 IPR011990 GO:0005515
Pvu10g0843 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Pvu10g0843 748 PANTHER OS07G0578800 PROTEIN-RELATED 447 740 IPR045215 GO:0003723|GO:0009451
Pvu10g0843 748 PANTHER OS07G0578800 PROTEIN-RELATED 7 251 IPR045215 GO:0003723|GO:0009451
Pvu10g0843 748 PANTHER OS07G0578800 PROTEIN-RELATED 248 326 IPR045215 GO:0003723|GO:0009451
Pvu10g0843 748 PANTHER OS07G0578800 PROTEIN-RELATED 382 448 IPR045215 GO:0003723|GO:0009451
Pvu10g0843 748 PANTHER OS07G0578800 PROTEIN-RELATED 302 391 IPR045215 GO:0003723|GO:0009451
Pvu10g0843 748 Gene3D Tetratricopeptide repeat domain 573 744 IPR011990 GO:0005515
Pvu10g0843 748 Pfam E motif 638 700 IPR046848 -
Pvu10g0843 748 Pfam PPR repeat family 521 568 IPR002885 -
Pvu10g0843 748 Pfam PPR repeat 47 75 IPR002885 -
Pvu10g0843 748 Pfam PPR repeat 356 385 IPR002885 -
Pvu10g0843 748 Gene3D Tetratricopeptide repeat domain 140 230 IPR011990 GO:0005515
Pvu10g0843 748 Gene3D Tetratricopeptide repeat domain 14 139 IPR011990 GO:0005515
Pvu10g0843 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 521 555 IPR002885 -
Pvu10g0843 748 TIGRFAM PPR: pentatricopeptide repeat domain 49 74 IPR002885 -
Pvu10g0843 748 TIGRFAM PPR: pentatricopeptide repeat domain 267 295 IPR002885 -
Pvu10g0843 748 TIGRFAM PPR: pentatricopeptide repeat domain 80 109 IPR002885 -
Pvu10g0843 748 TIGRFAM PPR: pentatricopeptide repeat domain 144 173 IPR002885 -
Pvu10g0843 748 TIGRFAM PPR: pentatricopeptide repeat domain 391 422 IPR002885 -
Pvu10g0843 748 TIGRFAM PPR: pentatricopeptide repeat domain 174 205 IPR002885 -
Pvu10g0843 748 TIGRFAM PPR: pentatricopeptide repeat domain 596 620 IPR002885 -
Pvu10g0843 748 TIGRFAM PPR: pentatricopeptide repeat domain 236 266 IPR002885 -
Pvu10g0843 748 TIGRFAM PPR: pentatricopeptide repeat domain 360 390 IPR002885 -
Pvu10g0843 748 TIGRFAM PPR: pentatricopeptide repeat domain 298 328 IPR002885 -
Pvu10g0843 748 TIGRFAM PPR: pentatricopeptide repeat domain 523 557 IPR002885 -
Pvu10g0843 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Pvu10g0843 748 SUPERFAMILY TPR-like 358 678 IPR011990 GO:0005515
Pvu10g0843 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 233 IPR002885 -
Pvu10g0843 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Pvu10g0843 748 Pfam PPR repeat 298 327 IPR002885 -
Pvu10g0843 748 Pfam PPR repeat 205 228 IPR002885 -
Pvu10g0843 748 Pfam PPR repeat 111 134 IPR002885 -
Pvu10g0843 748 Pfam PPR repeat 595 620 IPR002885 -
Pvu10g0843 748 Pfam PPR repeat 236 266 IPR002885 -
Pvu10g0843 748 Pfam PPR repeat 80 108 IPR002885 -
Pvu10g0843 748 Pfam PPR repeat 391 420 IPR002885 -
Pvu10g0843 748 Pfam PPR repeat 267 295 IPR002885 -
Pvu10g0843 748 Pfam PPR repeat 495 517 IPR002885 -
Pvu10g0843 748 Pfam PPR repeat 144 171 IPR002885 -
Pvu10g0843 748 Pfam PPR repeat 174 204 IPR002885 -
Pvu10g0843 748 Pfam PPR repeat 422 451 IPR002885 -
Pvu10g0843 748 Pfam PPR repeat 332 354 IPR002885 -
Pvu10g0843 748 SUPERFAMILY HCP-like 152 384 - -
Pvu10g0843 748 PANTHER OS12G0289800 PROTEIN 7 251 - -
Pvu10g0843 748 PANTHER OS12G0289800 PROTEIN 302 391 - -
Pvu10g0843 748 PANTHER OS12G0289800 PROTEIN 447 740 - -
Pvu10g0843 748 PANTHER OS12G0289800 PROTEIN 248 326 - -
Pvu10g0843 748 PANTHER OS12G0289800 PROTEIN 382 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0843 Pvu-Chr10 30062674 30064920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0843 103 728 Glycoside Hydrolase AT3G49170 30.548 3.92e-99 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0843 - - gmx:100814497 1294.26