Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0739 ATGGCAGACATTTCGTTTTTCTTTACTAACTTCCCCGAACATTTCATGGAGAGAGATCTTTGGAAGGTTTTCCAAAGGTGGGGAAGGGTTATGGACGTCTTTGTTTCAAGAAAGCTCAATGCAAGGAATAAGAAGTTTGGTTTTGTAAGGTTCCAGGGTGTGAAGGATGTCTTTTCCTTGGAAAGAGAGTTGAGTGCAATCTGGATTGGCACTTGGAATATGCAGGTGAACCTTCCCAAATATCAGAGGAAGGATGGACCAAGGAAGCAAAGGAATGAAGGGTCTAAATTAGGGTGGAACCCAAAGCTGAGCACAACGAGCGGGAAGGGGAAGCAGACGGAGCAGGTTTCGTTTGCTCAAGTTGTTTCAGAGGGGGTAGTCAAGATCGGAACAGGCGAGAACGTGAGTAGTTCTCTGGGGGGTGAGGTCGATTATCAGTTTACAGTGGAGGTAGAACAGGATGATTCGTTAGAAGGAAGCTACGTTGGTAGTTTGAAAGAGCTTCCAAGCATGCATGTGATTAAGGAGAGCTTTGTGATGGGAGGTTTCAGCCTAGTCAAAGTGAGATATCTTGGTGGCAGGTTTGTTCTGCTTTCATGCGATGATGGAGGGAGTCTGCGGAAGATCATAGCAGACAACAAGTCATGGTTCGACAAAGTTTTCTCAGCGGTTACCCCCTGGGATGGTTCGTTCGAACTGACAGAACGTTATGCACGGATTCGTTGCAGTGGAATCCCGTTACAGTTCTGGTGGAATCACAGCTTTTCTAAAATAGGGGCCGTTGTGGGGGAGGTGGTGGAGGTTGACGAAGCAACTAAGAGAAGAGAAATAGTGGAGTTTGCTCGGTTTAGAGTTAAAACAACGGTCAGAACAACAGTCAATATGGAGAAGGAGTTTTGTATCAATGGAAGGTCGTGTAAGGTGGCCTTCGTTGAAGAGTCTGGGACCAGTGTGGCTAGAGATGGAGTTGACGAGCGTTCGTTGACACTAGTAAAGGTTCTCCCAAAGTTTGCAGTAGTCCAAGGTTTGACTGATAGTGGATCGGCAGACCCTGAAAAGTTAGATGAAGCGGAGGAGGCAAGGAGGTCAGAGGCGTCAAAGTCGAGAGAAGGAGGGTGTGCTTTCCATCCGGGAGGGCAGTCTGAGGAATTGGGGGCGGGTATGGAAGATGAAGTGGAAGGTGGGGGCAACATCGTTGATATGGAGGGCAGGTCGTCGGGCTCAGATGGAGAAGTCGTAGGAAGACAGTCCTTAGTGGATCAAGTTTTTTTGGTTCACCAAACAGACAGTTCGTCGAATTCGCTATTCACTTCTGACAGTGCAATTGAGAATTGTAACAGGATTTTTTGGGTGAAGACAGATAAGAATATGGCTGCAAGTGTCTGGGGAGTAGGGAAAGAAGCTGGATTTTCGTTCGTTGATCGAGAAGAG 1431 0.4724 MADISFFFTNFPEHFMERDLWKVFQRWGRVMDVFVSRKLNARNKKFGFVRFQGVKDVFSLERELSAIWIGTWNMQVNLPKYQRKDGPRKQRNEGSKLGWNPKLSTTSGKGKQTEQVSFAQVVSEGVVKIGTGENVSSSLGGEVDYQFTVEVEQDDSLEGSYVGSLKELPSMHVIKESFVMGGFSLVKVRYLGGRFVLLSCDDGGSLRKIIADNKSWFDKVFSAVTPWDGSFELTERYARIRCSGIPLQFWWNHSFSKIGAVVGEVVEVDEATKRREIVEFARFRVKTTVRTTVNMEKEFCINGRSCKVAFVEESGTSVARDGVDERSLTLVKVLPKFAVVQGLTDSGSADPEKLDEAEEARRSEASKSREGGCAFHPGGQSEELGAGMEDEVEGGGNIVDMEGRSSGSDGEVVGRQSLVDQVFLVHQTDSSSNSLFTSDSAIENCNRIFWVKTDKNMAASVWGVGKEAGFSFVDREE 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0739 477 PANTHER RNA RECOGNITION MOTIF 5 429 - -
Pvu10g0739 477 MobiDBLite consensus disorder prediction 97 111 - -
Pvu10g0739 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 52 IPR000504 GO:0003723
Pvu10g0739 477 CDD RRM_SF 7 77 - -
Pvu10g0739 477 MobiDBLite consensus disorder prediction 349 369 - -
Pvu10g0739 477 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 429 - -
Pvu10g0739 477 Pfam Domain of unknown function (DUF4283) 181 285 IPR025558 -
Pvu10g0739 477 Gene3D - 5 115 IPR012677 -
Pvu10g0739 477 MobiDBLite consensus disorder prediction 81 111 - -
Pvu10g0739 477 MobiDBLite consensus disorder prediction 345 386 - -
Pvu10g0739 477 SMART rrm1_1 5 77 IPR000504 GO:0003723
Pvu10g0739 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 81 IPR000504 GO:0003723
Pvu10g0739 477 SUPERFAMILY RNA-binding domain, RBD 7 312 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0739 Pvu-Chr10 19051598 19053819 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0739 - - pvu:PHAVU_008G195200g 473.781