Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu10g0585 | ATGGGGAAAATTCCTCCTTCATTCCGCTCTGCAATCGGAAACCCTAACATTCGAAACCCTTCTTCTCTGTTCCGTCCTCAACCACCTTCTTCTCCCTCCAAACCGCCCTCTCTCAAGAAACAGTCCCCAAAACCCATCCCTAAACCAAATCCTATCTTCAAATCCCCAAATCTCGAAGACGCCAAGAAAATCTTCGACTCCATTGCCAATTCCTCCAAAGACCCTCGCTTCCCCAATTCCCTCCTCCACTCCTACGCCAAAATCGCCGCCTCCACCACCGACTCCGTCAAATTCCTCCACCACATCACCAAAACCCTCCCTTCCTTTTCCCCCGATCGTTCCACCTTCCACATTCTCCTTTCCCACTCCTGCGCCAACCCCAATTCCAATTCCAATTCCAGTTCCAATTCCGCTATCTCCGCAATACACCAAACCCTAAATTCAATGCACGCCGCCGGCGTCACTCCGGATGCCGCCACGGCCGATGTTGCGATCCGCGCCTTATGCTCTGCCGGTCACCTTGACCACGCCATTGAATTGGTCAATGAATTCGCCTCCAAACACTGCCTTCCGGACACCTACACCTTCAATTTCCTTGTCAAGCACCTCTGCAAAGCCCGCGCCCTATCCAGTGTTTACGACTTCATCGACGAAATGCGCGAAAAATTCGGTGTAAAGCCTGATCTTGTTACCTACACTATATTGATTGACAATGTGTGTAATGGTAAGAACTTGAGGGAGGCAATGAGGTTGGTGAGTGTGCTTCATGAGGAAGGGTTCAAGCCTGATTGCTTTGTGTATAACACGATTATGAAAGGGTATTGTGTGCTGAGTAGAGGGAGTGAGGCGATTGAGGTTTATAACAAGATGAAGGAGGAAGGGGTGGAGCCTGATCTTGTCACTTACAACACTTTGATTTTTGGGTTGTCCAAGTCGGGGAGGGTGGTGGAGGCCAAGAAGCTGCTGCGTGTGATGGCGGAGAAGGGTTATTTTCCTGATGAGGTGACTTATACTACATTGATGAATGGGATGTGTAGGAAGGGGGAGGTGCTGGCGGCGCTGGCATTGTTGGGGGAGATGGAGGGGAAGGGGTGCAGCCCCAATGAATGCACATACAACACACTGCTGCACGGGTTGTGCAAGGCGAGGTTGTTGGAGAAGGCAATTGAGTTCTATGGGGTGATCAAGGAGGGTGGTTTGAAGTTTGATACGGCTTCTTATGGGACATTTGTGAGGGCACTGTGTAGGGATGGGAGAGTTGCCGAGGCTTATGAGGTGTTTGATTATGCTGTTGAGAGCAAGAGCTTGACTGATGTTGCTGCTTACTCGACGCTGGAGAGCACACTTAAGTGGCTCAAGAAGGCTAAAGAACAAGGGCTTGCTGTTTAG | 1389 | 0.504 | MGKIPPSFRSAIGNPNIRNPSSLFRPQPPSSPSKPPSLKKQSPKPIPKPNPIFKSPNLEDAKKIFDSIANSSKDPRFPNSLLHSYAKIAASTTDSVKFLHHITKTLPSFSPDRSTFHILLSHSCANPNSNSNSSSNSAISAIHQTLNSMHAAGVTPDAATADVAIRALCSAGHLDHAIELVNEFASKHCLPDTYTFNFLVKHLCKARALSSVYDFIDEMREKFGVKPDLVTYTILIDNVCNGKNLREAMRLVSVLHEEGFKPDCFVYNTIMKGYCVLSRGSEAIEVYNKMKEEGVEPDLVTYNTLIFGLSKSGRVVEAKKLLRVMAEKGYFPDEVTYTTLMNGMCRKGEVLAALALLGEMEGKGCSPNECTYNTLLHGLCKARLLEKAIEFYGVIKEGGLKFDTASYGTFVRALCRDGRVAEAYEVFDYAVESKSLTDVAAYSTLESTLKWLKKAKEQGLAV* | 463 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu10g0585 | 462 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL | 1 | 461 | - | - | |
| Pvu10g0585 | 462 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 157 | 191 | IPR002885 | - | |
| Pvu10g0585 | 462 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
| Pvu10g0585 | 462 | Pfam | PPR repeat family | 191 | 241 | IPR002885 | - | |
| Pvu10g0585 | 462 | Pfam | PPR repeat family | 262 | 311 | IPR002885 | - | |
| Pvu10g0585 | 462 | Pfam | PPR repeat family | 332 | 381 | IPR002885 | - | |
| Pvu10g0585 | 462 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 192 | 222 | IPR002885 | - | |
| Pvu10g0585 | 462 | SUPERFAMILY | HCP-like | 247 | 456 | - | - | |
| Pvu10g0585 | 462 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 228 | 262 | IPR002885 | - | |
| Pvu10g0585 | 462 | TIGRFAM | PPR: pentatricopeptide repeat domain | 165 | 193 | IPR002885 | - | |
| Pvu10g0585 | 462 | TIGRFAM | PPR: pentatricopeptide repeat domain | 300 | 334 | IPR002885 | - | |
| Pvu10g0585 | 462 | TIGRFAM | PPR: pentatricopeptide repeat domain | 335 | 369 | IPR002885 | - | |
| Pvu10g0585 | 462 | TIGRFAM | PPR: pentatricopeptide repeat domain | 370 | 403 | IPR002885 | - | |
| Pvu10g0585 | 462 | TIGRFAM | PPR: pentatricopeptide repeat domain | 266 | 298 | IPR002885 | - | |
| Pvu10g0585 | 462 | TIGRFAM | PPR: pentatricopeptide repeat domain | 230 | 264 | IPR002885 | - | |
| Pvu10g0585 | 462 | TIGRFAM | PPR: pentatricopeptide repeat domain | 406 | 434 | IPR002885 | - | |
| Pvu10g0585 | 462 | TIGRFAM | PPR: pentatricopeptide repeat domain | 194 | 228 | IPR002885 | - | |
| Pvu10g0585 | 462 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 263 | 297 | IPR002885 | - | |
| Pvu10g0585 | 462 | MobiDBLite | consensus disorder prediction | 25 | 52 | - | - | |
| Pvu10g0585 | 462 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 333 | 367 | IPR002885 | - | |
| Pvu10g0585 | 462 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 298 | 332 | IPR002885 | - | |
| Pvu10g0585 | 462 | Pfam | PPR repeat | 399 | 429 | IPR002885 | - | |
| Pvu10g0585 | 462 | Gene3D | Tetratricopeptide repeat domain | 327 | 461 | IPR011990 | GO:0005515 | |
| Pvu10g0585 | 462 | Gene3D | Tetratricopeptide repeat domain | 257 | 326 | IPR011990 | GO:0005515 | |
| Pvu10g0585 | 462 | PANTHER | PPR CONTAINING PLANT-LIKE PROTEIN | 1 | 461 | - | - | |
| Pvu10g0585 | 462 | Pfam | PPR repeat | 165 | 187 | IPR002885 | - | |
| Pvu10g0585 | 462 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 368 | 402 | IPR002885 | - | |
| Pvu10g0585 | 462 | Gene3D | Tetratricopeptide repeat domain | 91 | 256 | IPR011990 | GO:0005515 | |
| Pvu10g0585 | 462 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 403 | 437 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu10g0585 | 213 | 459 | Glycosyltransferase | AT1G05670 | 30.040 | 9.61e-24 | 102 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu10g0585 | - | - | gmx:100782321 | 724.931 |