Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0583 ATGTTCTTTTCACTCACATATTCCTTCACGTTCTTCTTCATTCTCACATCATCATCACCTTCATACATTGCAACATTCACACCACCAGCCACCAAAATATCTATCACAAGCCACAACATTCAGAGCCTCAGCAATGCTGACAAAGGGGCAAAAATGGCAGGTATATCACAGATTAAAAGATATCTACATCGGTTTGGGTACCTACAAAACAACAACAACACTTTTAACGACGAATTTGATGTCGTGTTGGAATCCGCTCTCATTAGATACCAAGGAAACCTTGGCCTCCAAGTAACAGGGAAGCTCGACTCCAACACGGTTGCTCAAATGATAACACCAAGATGTGGTGATCCAGACACAAACACAAGACCCCAGAATCACGATCACAATCACGTCGACAACGTGCGTTCTTCAAAGAATTTCGTGTTTTTCCCGGGAAAACCACGGTGGTCACGTTCAATGCCAATGACACTCACCTACGCCTTCGCGCGTGAGAACATGATCCATAGTTTGAGCATGAAGGAGATAAGAGTGGCATTCCAACGTGCATTCTTAAGATGGGCTTCGGTAATTCCAGTTAGCTTTGTCGAGGTGAGTGACTCTGAAGTTTCGGATTTGAAAATAGGGTTTTACAATGGGGAGCATGGTGATGGTGAGCCCTTTGATGGGGTGCTTGGGGTGTTGGCCCACTCCTTCTCGCCGGAGATCGGCCGCCTCCACCTTGACGAGGCAGAGACATGGGCGGTGGACTTCCAGGCCACGGCGTCGGAGGTGGCGGTGGACTTGGAGTCGGTGGCCACACATGAGATTGGCCACTTGTTAGGGTTGTCTCATAGTTCGGTGAAAGAGGCTGTGATGTATCCAAGTTTGAGGCCTAGAGATAAGAGGGCTAATCTCAACATTGATGACATAAAGGGAGTGCAATCTCTATATGGATCAAACCCTAATTTCAGATCCGAGTGGTCACTAGAATCTGATATTTCGGCAAATAAAGATTCCAACTTTGTGAAACCTTTGAGAAGTTCAATTGTATGCTTGATTAAATCCGTCTTCACTGTTGTACCTCTGTTCTATATGTCTATTTTTAAAGCTCCAACGTTGGATTAA 1107 0.4544 MFFSLTYSFTFFFILTSSSPSYIATFTPPATKISITSHNIQSLSNADKGAKMAGISQIKRYLHRFGYLQNNNNTFNDEFDVVLESALIRYQGNLGLQVTGKLDSNTVAQMITPRCGDPDTNTRPQNHDHNHVDNVRSSKNFVFFPGKPRWSRSMPMTLTYAFARENMIHSLSMKEIRVAFQRAFLRWASVIPVSFVEVSDSEVSDLKIGFYNGEHGDGEPFDGVLGVLAHSFSPEIGRLHLDEAETWAVDFQATASEVAVDLESVATHEIGHLLGLSHSSVKEAVMYPSLRPRDKRANLNIDDIKGVQSLYGSNPNFRSEWSLESDISANKDSNFVKPLRSSIVCLIKSVFTVVPLFYMSIFKAPTLD* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0583 368 SMART col_5 146 313 IPR006026 GO:0006508|GO:0008237|GO:0008270
Pvu10g0583 368 Pfam Putative peptidoglycan binding domain 52 110 IPR002477 -
Pvu10g0583 368 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 142 315 - -
Pvu10g0583 368 SUPERFAMILY PGBD-like 47 120 IPR036365 -
Pvu10g0583 368 CDD ZnMc_MMP 149 312 IPR033739 GO:0008237|GO:0008270
Pvu10g0583 368 PRINTS Matrixin signature 110 123 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pvu10g0583 368 PRINTS Matrixin signature 180 195 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pvu10g0583 368 PRINTS Matrixin signature 204 232 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pvu10g0583 368 PRINTS Matrixin signature 265 290 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pvu10g0583 368 PRINTS Matrixin signature 299 312 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pvu10g0583 368 PANTHER METALLOENDOPROTEINASE 4-MMP 18 350 - -
Pvu10g0583 368 Pfam Matrixin 150 312 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Pvu10g0583 368 Gene3D Collagenase (Catalytic Domain) 46 317 IPR024079 GO:0008237
Pvu10g0583 368 PANTHER MATRIX METALLOPROTEINASE 18 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0583 Pvu-Chr10 9139244 9143267 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0583 - K07999 gmx:100781237 548.125