Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0556 ATGGCGAAGGTTGAAAGCAGCATGGCTCGGGTGATTCTGGAGCCACACGCGCAGTTCGACCTCACCGCCCACTCACGCGCCAGTTCCATTCGATCGCTCGCACTCGCCACACTGCCGCACGCGAGACGGCACCGTGCTGCTGTCCTCTATGTCGGCACTCACTCGGGAACCCTCTTCTCCCTCTCCGTGGACACCGACGACGGTGACGGCGCCCCGAACGACGCCGTTCTGCGGAAGCTCTCGTTCCTACGGAGCGTTTCGGTGAGCGACGCCGCAGTGGAGTGCATTTCGGTGATCGAGGAGTGCGGGAAGGTTCTGTTGCTCTCCGATGGGGCTTTGTTCTTGGTGGACTCGGAGCTCTCAAATCGCGCTTCGAAATTGAGTTTCTCGAAGGGAGTATCGTTGGTCACGAGGAGACGGTTCAGGAACGGCGAATCCGAGGGTGTGGGTTTGGGTTTGGGTTCGGGGCTAGGTTCGGGGTTAGGGTTGTTTCAGAAATTGAGACTGAACTCAGTGAAGGAGGGTGAAATGCAGAGTGAGGGTGGTTGTGTTTTTGCGCTTGTTGTTGGGAAGAGGTTGATTATTGCGGAGCTTGTCTTGGGGAATAGGAATGGGAAAAGTGAGAGGGATGATGGTGGTGGGGGCTCTCTTGTGGTTTTGAAGGAGATTCAGTGTGTGGATGGGGTTGTTAGTGCCATGGTGTGGCTTAATGATTCTATTGTTGTTGGTACTGTGAATGGGTATAGGTTGATTTCCTGTGTAACTGGGCAGAGCAGTGTGATCTTCTCGCTGCCGGATGTGTCGCGGCCGCCAAGGTTGAAGCTTTTGCACAAGGAGTGGAGGGTGCTGTTGTTGGTGGACAATGTGGGGGTTATTGTTGACGCACATGGGCAGCCAGTGGGAGGGAGTCTGGTGTTCCGGAATGGGTTGGATTCGGTTGGAGAGATTGGTTCTTATGTGGTTGTGGTGAGTGATGGGAAGATTGAGTTGTATCATAAGAGATATGGTGGCTGTGTTCAGGTTTTGCCGTTTGGTGGGGAAGGAGTTGGGCGATGTGTTGTTGCTAGTGAGGAAGATAGGGATGGGAAGCTTGTTGTTGTTGCCACTGCTACCAAGGTAGTGTGCTATCAGAAATTACCTTCTGTAGAACAAATAAAAGACCTTCTGAGGAAGAAGAACTATAAGGGAGCCATATCCTTGGTGGAGGAGCTTGAGTTAGAAGGGGAAATGTCAAAAGATTTGCTCTCGTTTGTTCATGCTCAAGTGGGATTCCTCTTGCTTTTTGACTTGCATTTTAAAGAAGCAGTGGACCACTTCTTGCTTTCTGACACTATGCAACCTTCTGAAGTATTCCCATTTATAATGCGTGATCCAAATCGATGGTCCTTACTGGTTCCTAGGAATAGGTATTGGGGTTTGCATCCTCCACCAGCCCCTCTTGAAGATGTTATAGATGATGGTTTGATGACAATCCAAAGAGCTTCTTTTCTGAGGAAAGCAGGTGTAGAAACAATGGTAGATAATGATCTTTTTCTCAATCCAGCGAATAGAGCTGATTTGTTGAAATCAGCAATCAAAAACATTAGTAGGTATTTGGAGGCCTGTCGAGAAAAAGACCTAGCAGAATCAGTCAGGGAGGGAGTTGACACTCTACTAATGTATCTCTATAGAGCTCTAAATTGTGTTGAGGACATGGAGAGGCTGGCGTCTTCTACAAACTGGTGTGTTGTGGAGGAATTGGAACAGATGTTAGAAGAGTCTGGGCACCTACGGACACTTGCCTTCTTGTGTGCAAGTAAAGGAATGAGCTCAAAAGCTGTGCTTATTTGGCGCATCCTAGCGAGAAATTATTCATCCGGCCTGTGGAAAGACCCTGCTTTGGAGAATAGCACGCAGGATAGTAGGGAAAGCCTCATTTCTGGCAGGGCAATTGCTGCAGCTGAAGCTTCAAAGATTCTTGAGGAATCATCTGACCAAGAGTTGATTCTAGAACATTTAGGATGGATTGCAGATGTTAGCCAGGTTCTTGCAGTCAAAGTTTTAACTTCAGAGAAACGAGAGATCCATCTTTCTCCTGATGAAGTTGTAACAACCATTGATCCACAAAAGGTAGAAATTTTACAGAGGTATCTCCAGTGGTTGATTGAAGACCAGGACTGTAATGATACACAGTTGCATACGTTGTATGCCCTCTCACTTGCCAAATCAGCAATTGAAGTCATTGAATATGAAAATATCTCTGAGAATCTAAATGGTGAAAATATGGAGACAAGAAGTTTGGCTGCTTTGAAGAACTCAATCTTTGACATTCCTGTCAGGGAAAGATTGCAGATATTTTTGCAATCCTCGGACTTGTATGATCCAGAAGAAGTTCTTTATTTGATTGAAGGATCAGAATTGTGGTTAGAGAAGGCTATTCTGTATAGAAGACTGGGGCAGGAGACTTTGGTCCTCCAAATTTTGGCTTTGAAACTAGAAGACAGTGAAGCTGCTGAGCAGTATTGTGCTGAGATAGGAAGGGCTGATGCCTACATGCAGTTGCTTGAAATGTATTTGGACCCACAAGATGGGAAGGATCCCATGTTTACTGCTGCTGTTCGCCTACTCCACAATCATGGAGAATCGTTAGATCCGTTGCAAGTTTTAGAGAAACTATCTCCAGATATGCCACTTCAACTTGCTTCTGATACTTTACTAAGAATGTTCAGGGCCAGAGTTCATCATCATCGTCAAGGCCAGATTGTGCATAATTTATCTCGTGCTGTGGACATTGATGCAAGATTATCAAGATTGGAGGAGAGGTCAAGGCATGTGCAAATTGATGATGAGAGTCTATGTGATTCATGTGATGCACGCCTTGGTACGAAGCTATTTGCAATGTATCCTGATGACACTGTTGTATGTTACAAGTGTTACCGTCGTCAAGGTGAGTCAGTGTCTGTCTCAGGCCGTAATTTTAAGGAAGACATCCTATTTAAACCAGGTTGTCTCGTGAGTAGATGA 3003 0.4649 MAKVESSMARVILEPHAQFDLTAHSRASSIRSLALATLPHARRHRAAVLYVGTHSGTLFSLSVDTDDGDGAPNDAVLRKLSFLRSVSVSDAAVECISVIEECGKVLLLSDGALFLVDSELSNRASKLSFSKGVSLVTRRRFRNGESEGVGLGLGSGLGSGLGLFQKLRLNSVKEGEMQSEGGCVFALVVGKRLIIAELVLGNRNGKSERDDGGGGSLVVLKEIQCVDGVVSAMVWLNDSIVVGTVNGYRLISCVTGQSSVIFSLPDVSRPPRLKLLHKEWRVLLLVDNVGVIVDAHGQPVGGSLVFRNGLDSVGEIGSYVVVVSDGKIELYHKRYGGCVQVLPFGGEGVGRCVVASEEDRDGKLVVVATATKVVCYQKLPSVEQIKDLLRKKNYKGAISLVEELELEGEMSKDLLSFVHAQVGFLLLFDLHFKEAVDHFLLSDTMQPSEVFPFIMRDPNRWSLLVPRNRYWGLHPPPAPLEDVIDDGLMTIQRASFLRKAGVETMVDNDLFLNPANRADLLKSAIKNISRYLEACREKDLAESVREGVDTLLMYLYRALNCVEDMERLASSTNWCVVEELEQMLEESGHLRTLAFLCASKGMSSKAVLIWRILARNYSSGLWKDPALENSTQDSRESLISGRAIAAAEASKILEESSDQELILEHLGWIADVSQVLAVKVLTSEKREIHLSPDEVVTTIDPQKVEILQRYLQWLIEDQDCNDTQLHTLYALSLAKSAIEVIEYENISENLNGENMETRSLAALKNSIFDIPVRERLQIFLQSSDLYDPEEVLYLIEGSELWLEKAILYRRLGQETLVLQILALKLEDSEAAEQYCAEIGRADAYMQLLEMYLDPQDGKDPMFTAAVRLLHNHGESLDPLQVLEKLSPDMPLQLASDTLLRMFRARVHHHRQGQIVHNLSRAVDIDARLSRLEERSRHVQIDDESLCDSCDARLGTKLFAMYPDDTVVCYKCYRRQGESVSVSGRNFKEDILFKPGCLVSR* 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0556 1000 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 680 860 IPR000547 GO:0006886|GO:0016192
Pvu10g0556 1000 ProSiteProfiles Citron homology (CNH) domain profile. 27 357 IPR001180 -
Pvu10g0556 1000 Pfam Vacuolar sorting protein 39 domain 2 866 973 IPR019453 -
Pvu10g0556 1000 PANTHER CNH DOMAIN CONTAINING 9 989 IPR032914 GO:0016192
Pvu10g0556 1000 PANTHER VAM6/VPS39-LIKE PROTEIN 9 989 - -
Pvu10g0556 1000 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 48 384 IPR011047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0556 Pvu-Chr10 8412714 8430627 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0556 K20177 - gmx:100819895 1702.18