Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0516 ATGGGAATCCTCGCTTTGCCGTTAGTCATCTCCCTTCTCAAACCCCACGCCACCACTCGCCTCCGCCTCTCCCACTCCCTCCTCCTCCGCCGCCCCTTTGCCACCACCGTCTCCGCCACCACCACTCCTCATTCTCCTCCACCTTCATCTTCACCTTCTCTCTCACGCCACTCTTCTGCTTCAGCTCTCTCCGACAATCGTTCCGTTAACTCCTCATCCCTCACCTTCCAGCAAGCCATTCAGCGCCTTCAGGAATACTGGGCTTCTGTTGGATGTTCCATAATGCAATGTAGCAACACAGAGGTTGGAGCTGGGACTATGAATCCTCTTACATATTTAAGGGTTCTTGGCCCTGAACCATGGAATGTCGCGTATGTGGAACCTAGCGTCCGCCCTGATGATAGTCGATACGGAGAAAACCCGAATAGGCTCCAAAGACATACTCAATTTCAGGTGATATTGAAGCCTGATCCTGGAAACTCCCAGGATCTTTTTATCCGCAGCCTCTCTGCTTTAGGTATTGATGTTGCCGCACATGATATACGATTTGTGGAAGATAACTGGGAGAGTCCGGTTCTTGGTGCTTGGGGTTTGGGCTGGGAAATTTGGATGGATGGGATGGAGATTACACAATTCACCTACTTTCAGCAGGCTGGAAGTCTCCAGTTATCACCTGTATCTGTGGAAATTACTTATGGCCTTGAGCGTATCCTTATGTTACTGCAGGGGGTTGATCACTTCAAGAAGATAAAATATTCTGATGGAATTACATATGGAGAGTTGTTCTTGGAGAATGAGAAGGAAATGAGTGCATATTACTTGGAGCATGCTAGTGTTGATCACGTTCAAAAACATTTTGATTTCTTTGAGGAGGAAGCTCGTAGCTTACTTTCTTCTGGCTTTGCAATCCCTGCGTATGATCAGCTCCTGAAAACATCTCATGCTTTTAATATCTTAGACTCCAGAGGCTTTGTTGGAGTAACAGAGCGAGCTCGTTATTTTGGTCGCATGCGTAGTTTGGCTCGCCAATGTGCTCAACTGTGGTTGAAGACAAGAGAGATGCTTGGCTTTCCCCTTGGTTTTATCTCTGAACCTGATCATTTTGTATTGCCAAAAGGAGTTTTGGAAGCTGCATGTGTGAAGGTGCATGATCATTCAAGAGCATTTGTTCTTGAAATTGGGACTGAAGAGATGCCGCCTCAAGATGTTGTTGATGCCAGTAATCAACTGAAAGATTTAGTGCTGCAACTGCTTGAACGGCAAAGGCTAAACCATGGTGAAGTGCAAGCTTTTGGCACTCCGCGTAGATTAGTGGTTGCTGTTCAAAATCTTTACACAAAACAGGCTGAAAAGGAGGTTGAAGTTCGAGGTCCTCCTGTGTCAAAAGCATTTGATCATGAGGGAAATCCCACAAAGGCCATTGAGGGTTTTTGTCGTAGATACTCTGTACCACTGGACCTAGTATACAGAAAGGTCGATGGGAAAACAGAATATGTTTATGCACATGTAAAGGAGTCTTCAAGATATGCTTTGGAGGTCTTGTCTGAAGATTTGCCTGCTACTATTGCTAAAATTTCTTTTCCGAAGACAATGCGTTGGAATTCTCAGGTGATGTTTAGCAGGCCTATCCGTTGGATTTTAGCTCTGCATGGAGATGTAGTAGTCCCATTTACGTTTGCTGGGGTGATAAGGTAA 1695 0.4566 MGILALPLVISLLKPHATTRLRLSHSLLLRRPFATTVSATTTPHSPPPSSSPSLSRHSSASALSDNRSVNSSSLTFQQAIQRLQEYWASVGCSIMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAYVEPSVRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVAAHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIKYSDGITYGELFLENEKEMSAYYLEHASVDHVQKHFDFFEEEARSLLSSGFAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTREMLGFPLGFISEPDHFVLPKGVLEAACVKVHDHSRAFVLEIGTEEMPPQDVVDASNQLKDLVLQLLERQRLNHGEVQAFGTPRRLVVAVQNLYTKQAEKEVEVRGPPVSKAFDHEGNPTKAIEGFCRRYSVPLDLVYRKVDGKTEYVYAHVKESSRYALEVLSEDLPATIAKISFPKTMRWNSQVMFSRPIRWILALHGDVVVPFTFAGVIR* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0516 564 TIGRFAM glyQ: glycine--tRNA ligase, alpha subunit 75 359 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Pvu10g0516 564 PRINTS Glycyl-tRNA synthetase alpha subunit signature 128 143 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Pvu10g0516 564 PRINTS Glycyl-tRNA synthetase alpha subunit signature 149 169 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Pvu10g0516 564 PRINTS Glycyl-tRNA synthetase alpha subunit signature 180 204 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Pvu10g0516 564 PRINTS Glycyl-tRNA synthetase alpha subunit signature 206 226 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Pvu10g0516 564 PRINTS Glycyl-tRNA synthetase alpha subunit signature 229 244 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Pvu10g0516 564 PRINTS Glycyl-tRNA synthetase alpha subunit signature 314 330 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Pvu10g0516 564 MobiDBLite consensus disorder prediction 51 67 - -
Pvu10g0516 564 CDD GlyRS_alpha_core 75 353 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Pvu10g0516 564 Pfam Glycyl-tRNA synthetase beta subunit 389 562 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Pvu10g0516 564 Pfam Glycyl-tRNA synthetase alpha subunit 76 353 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Pvu10g0516 564 PANTHER GLYCYL-TRNA SYNTHETASE 385 562 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Pvu10g0516 564 SUPERFAMILY Class II aaRS and biotin synthetases 75 353 IPR045864 -
Pvu10g0516 564 MobiDBLite consensus disorder prediction 38 67 - -
Pvu10g0516 564 Hamap Glycine--tRNA ligase alpha subunit [glyQ]. 74 354 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Pvu10g0516 564 Gene3D Class II aaRS and biotin synthetases; domain 2 278 357 - -
Pvu10g0516 564 Gene3D Bira Bifunctional Protein; Domain 2 61 277 IPR045864 -
Pvu10g0516 564 ProSiteProfiles Heterodimeric glycyl-transfer RNA synthetases family profile. 75 349 IPR006194 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0516 K14164 - gmx:100787365 1006.9