Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0509 GTGACTAGTAGGAGGATGAATTTTATAGTTGACAATATTGAGACGAACACCACGATGGACGGTTTGAAATTTGGTTATGAGACACGGGACCAAGAAAAGAACCGCAGCTGGTTGATATCTACTCTTCATCAAATATATAGTCGGAGATATCTTCTTAGGAGAAGTGCACTAGAGATATTTATGGTGGACAGTTCCAACTTCTTCTTTGACTTTGGGAGTAGAGAGGGGCGAAAAAATGCATATCAGGCAATTGTTCAAGCACGACCTTTGTATTTAAACAATATATATTTAGCTACTCAGAGGCCTGGACAACTTTTGAAAAGAACCCAACTTATGGAGCGTTGGGCAAGGTGGGAGATCAGTAATTTTGAGTATCTAATGCAACTCAATACATTGGCTGGGCGTAGTTATAATGATATAACTCAGTATCCAGTTTTCCCCTGGATTCTTTCTGATTACAGTTCAAAGAGCTTGGATCTTTCTAATCCTTCTTCTTACCGGGATCTTTCAAAGCCTATTGGAGCACTGAACCCAGATCGTCTTAAAAAATTTCAAGAGAGATACTCCAGCTTTGATGACCCAGTAATACCTAAATTCCACTATGGATCACACTACTCAAGTGCAGGAACAGTTTTGTATTATCTTGTTAGGGTTGAACCATTCACTACTCTTGCAATCAAACTTCAAGGTGGAAAATTTGATCATGCAGATCGAATGTTTTCTGATATTTCTGCTACTTGGAATGGAGTTCTTGAGGACATGAGTGATGTGAAGGAATTGGTTCCTGAGCTATTTTACCTCCCTGAGGTCCTCACGAATGAAAATTCAATTGATTTTGGCACAACACAATTGGGAGGAAAGCTTGATACTGTAAAACTTCCTGCTTGGGCTGAGAATCCAGTTGATTTTGTGCACAAGCATAGGATGGCTCTCGAGAGTGAATATGTATCTTCTCATTTGCATGAGTGGATTGATCTCATATTTGGGTATAAGCAACAGGGCAAAGAGGCTATTGCAGCAAATAATGTTTTCTTTTACATTACTTATGGAGGGACCGTGGATATTGATAAAATATCTGACCCAGTGCAACAGCATGCCACACAAGATCAGATTGCTTATTTTGGACAAACACCGTCCCAACTTTTGACTATTCCACACTTGAAGAAGAAGCCATTATCAGAAGTTCTTCATTTGCAGACAATATTCCGCAACCCAAAAGCAGTTAAGTCATATGTCATTCCATCCCCTGAACACTGCAATTTACCAGCAGCTGCTATCCACGCGTCTTCAGATATGGTTGTGGTTGTTGATTTGAATGCACCAGCAGCTCATGTTGCACAGCACAAGTGGCAACCCAATACACCTGATGGGCAGGGTACACCATTCCTCTTTCACCATGGAAAGGCTACAACAGGTTCTGCTGGTGGGATTATACGCATGTTAAAAGGTCCTGCTGGGACTGGAGAAGAGTGGCAATATCCCCAAGCATTGGCTTTTGCTGTATCTGGAATTAGAAGCCAAGCTATTGTCTCTATAACATGTGACAAAGAAATTATTACTGGTGGGCATGCTGATAATAGCATTAGGTTAATATCCTCAGATGGAGCTAAAACCTTGGAAACAGCCTATGCGCACTGTGCTCCTGTAACTTGCGTTGGTCTTTCACCGAATAGTGACTACCTGGTGACTGGATCCCGAGATACAACAGTACTACTCTGGAGAATAAAAAGGGCACTTGCATCGCATTCAAGTGTCACATCAGAATCTTCTACTGGGACTGGCACTGGCACGCTGCCTTCAACCAGCAGTAGTTCTTCATCACATCTGTTGATAGAAAAGAATCGTAGACGCCGTATTGAGGGCCCTATACAGGTACTTAGGGGGCATGACAGTGAAATACTCAGTTGTTGTGTTAACTCAGATCTTCGAATGGTTGTTTCATGCTCCCACTCATCGGATGTTCTCCTACACTCTATAAGAAAGGGACGTTTAATCAGAAGGCTGGATGGTGTGGTGGCTCACACTGTCTCTCTTTCCTCTGAAGGGGTTGTCGTTGTGTGGAATGAATCGAAGCATATTCTCAGTACCTTTACTCTTAATGGTATTCTGATTGCAAAAACAGAATTATCTTTCTCTAGCAGCATTAGTTGCATGGAAATTTCTCTTGATGGAAGGAGTGCTTTGATTGGAATTAATTCTCAAGAAAATGGTGGAGCCTACAACAGTTGGAATTCGCAATCGAGTAAGTCGGGTACTGAAGATTTTTATTCAGACTCAGAAGAAACTCAAGATAGCAACACAATAAATGCTCCATCACCTTCAATTTGCTTCCTGAATTTGCACACTTTGGAGGTGTTTCATGTGTTGAAGCTGAAAGAAGGACAGGATATCACAGCTCTTGCTCTAAATAAGGATAACACAAATCTTTTGGTTTCAACTTTGGATAAACAATTGATTATTTTTACTGATCCAACTTTGAGCTTGAAAGTGGTCGATCAAATGCTCAAGCTTGGTTGGGAAGGTGATGGGCTTAAGCACCTCATAAAATGA 2550 0.4122 VTSRRMNFIVDNIETNTTMDGLKFGYETRDQEKNRSWLISTLHQIYSRRYLLRRSALEIFMVDSSNFFFDFGSREGRKNAYQAIVQARPLYLNNIYLATQRPGQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSKSLDLSNPSSYRDLSKPIGALNPDRLKKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYYLVRVEPFTTLAIKLQGGKFDHADRMFSDISATWNGVLEDMSDVKELVPELFYLPEVLTNENSIDFGTTQLGGKLDTVKLPAWAENPVDFVHKHRMALESEYVSSHLHEWIDLIFGYKQQGKEAIAANNVFFYITYGGTVDIDKISDPVQQHATQDQIAYFGQTPSQLLTIPHLKKKPLSEVLHLQTIFRNPKAVKSYVIPSPEHCNLPAAAIHASSDMVVVVDLNAPAAHVAQHKWQPNTPDGQGTPFLFHHGKATTGSAGGIIRMLKGPAGTGEEWQYPQALAFAVSGIRSQAIVSITCDKEIITGGHADNSIRLISSDGAKTLETAYAHCAPVTCVGLSPNSDYLVTGSRDTTVLLWRIKRALASHSSVTSESSTGTGTGTLPSTSSSSSSHLLIEKNRRRRIEGPIQVLRGHDSEILSCCVNSDLRMVVSCSHSSDVLLHSIRKGRLIRRLDGVVAHTVSLSSEGVVVVWNESKHILSTFTLNGILIAKTELSFSSSISCMEISLDGRSALIGINSQENGGAYNSWNSQSSKSGTEDFYSDSEETQDSNTINAPSPSICFLNLHTLEVFHVLKLKEGQDITALALNKDNTNLLVSTLDKQLIIFTDPTLSLKVVDQMLKLGWEGDGLKHLIK* 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0509 849 Gene3D - 605 835 IPR015943 GO:0005515
Pvu10g0509 849 Pfam PH domain associated with Beige/BEACH 1 85 IPR023362 -
Pvu10g0509 849 SUPERFAMILY BEACH domain 97 389 IPR036372 -
Pvu10g0509 849 PANTHER WD-40 REPEAT PROTEIN/BEIGE PROTEIN 1 839 - -
Pvu10g0509 849 MobiDBLite consensus disorder prediction 740 768 - -
Pvu10g0509 849 CDD Beach 112 389 IPR000409 -
Pvu10g0509 849 PANTHER BEIGE/BEACH-RELATED 1 839 - -
Pvu10g0509 849 SMART Beach_2 112 389 IPR000409 -
Pvu10g0509 849 ProSiteProfiles Trp-Asp (WD) repeats profile. 542 583 IPR001680 GO:0005515
Pvu10g0509 849 ProSiteProfiles BEACH domain profile. 100 389 IPR000409 -
Pvu10g0509 849 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 542 576 - -
Pvu10g0509 849 Pfam Beige/BEACH domain 113 388 IPR000409 -
Pvu10g0509 849 SUPERFAMILY PH domain-like 2 88 - -
Pvu10g0509 849 SMART WD40_4 619 658 IPR001680 GO:0005515
Pvu10g0509 849 SMART WD40_4 535 574 IPR001680 GO:0005515
Pvu10g0509 849 SMART WD40_4 782 822 IPR001680 GO:0005515
Pvu10g0509 849 CDD PH_BEACH 1 88 IPR023362 -
Pvu10g0509 849 Pfam Neurobeachin beta propeller domain 507 724 IPR046851 -
Pvu10g0509 849 Gene3D BEACH domain 101 389 IPR036372 -
Pvu10g0509 849 ProSiteProfiles BEACH-type PH domain profile. 1 85 IPR023362 -
Pvu10g0509 849 MobiDBLite consensus disorder prediction 584 609 - -
Pvu10g0509 849 Gene3D - 463 604 IPR015943 GO:0005515
Pvu10g0509 849 Gene3D - 1 84 IPR011993 -
Pvu10g0509 849 SUPERFAMILY WD40 repeat-like 511 821 IPR036322 GO:0005515
Pvu10g0509 849 MobiDBLite consensus disorder prediction 584 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0509 Pvu-Chr10 7647183 7655782 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0509 - - pvu:PHAVU_010G048900g 1631.69