Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0503 ATGCGATACCCTCTCAAAATCCTTCACAAAGTGCCCTTACTACTATCATTCAAGCATGGCTCCAAACGCTTCCACACACTCAAACATGAACACCACCTGTTCGACCTTATTCTCCACCCAAATGCTGCGTCGGTTAACCGTTCAATGCTCAACCATTTGCACAACCACCTTCCTTTTCAAGCTCTTGCTGCATTCAAGGACCAGTTTCATTTGCATTCTCTTCAAAATGTTGACGAGGTCACCCTTGCCTTGTCCCTCAAGGCATGTCAAGGAGAGTTAAAACTTGGATGTCAAATCCACGGACTCCTTGTGAGTAGCGGGTTAGTTTCGCTTGTTTCCGTGTCTAATTCTCTCATGAAACTGTACTGCAAGTCAGGGAATTTCGGGAAGGCTTTGCTTGTGTTTGAGAATTTGAGTCATCCTGACATGGTGTCTTGGAATACTGTGCTTTCTGGGTTTGAGGAGAGTTTGGAAGCTTTGCTTTTTGCACGTTCTATGCATTTTCGTGGGATAGTTTTTGATCAGGTGACATATACTACTGCTCTTTCATTTTGTTGGGGTGATCATGGGATTTTATTTGGGTGGCAATTGCATTCTCTTGTGGTTAAGTGTGGATTTGGCTGTGAAGTTTTTATTGGGAATGCGCTTGTAACAATGTATTCAAGGTGGGGGATGTTAGATGAGGCTAGGAGAGTGTTTGACGAAATGCCCAAAAGAGATTTGGTTTCGTGGAATGCAATGATTTCAGGGTATTCTCAAGAAGGGGAATGTTATGGGTTGGAAGCAGTTTTATTGTTTGTCAACATGTTAAGTAACCATATATTAATTGACCATATTTCACTTACAGGTGCGGTTTCAGCTTGTGGTCATATGAGAAACTTAGAGCTTGGGAGGCAAATACATGGTTTGACCCAGAAAGTGGGATATGGAACACATGTATCAGTTTGCAATGTTTTGATGTCAACTTATTCAAAATGTGAGGTCCCTAATGACGCAAAAGCTGTTTTTGACGGCATTAGTAATCGGAATGTAGTGTCTTGGACGACAATGATTTCTATTGATGAAGAAGATGCAATGTCTCTCTTTAATGCAATGAGAATTGATGGAGTGTATCCAAATGATGTTACGTTTATAGGATTAATACATGCTGTAACAATCAGGAATTTAGTGACAGAAGGTCTAATGATCCATGGGTTATGCATAAAAAGCTGCTTTTTGTCAGAACAAACCGTCTCCAATAGCCTTGTTACCATGTATGCCAAATTTGAGTGCATTCGAGAATCAGAGAAGATTTTTGAGGAGCTTAACTGTCGTGAAACAGTATCGTGGAATGCATTGATTTCAGGGTATGCTCAAAATGGCTTGTATAAAGAAGCTTTCCGCACATTTTTGTCTGCGGTAGAGGAGATAACGCCCAGCCAGTACACATTTAGTAGTGTGTTAAATGCTATTGCTGCTGCTGAGGATATACCACTGAAACATGGGCAACGTTGCCATTCTTACTTGCTCAAACTTGGTTTAAACACTGACCCAACTGTTTCAGGGGCTCTACTTGACATGTATGGCAAGCGTGGAAACAATATTGAGTCTCAAAGAGTGTTCGATGAGACACTTGAACGGACCCAGTATGCTTGGACAGCAATAATATCTGCCTATGCCCGCCATGGAGACTTTGAGACCGTGATGAGTTTGTATACAGAAATGGAGAGGGAAGGAATCAGTCCTGACTTCATCACTTTCCTTTCTGTTTTAACCGCTTGCTGTAGAAAGGGCATGGTTGATGTAGGCCATAGAGTATTTGAGTCTATGGTGAAGAAACATTCAATTGAGCCCACCTCTGAACATTATTCTATTATGGTGGACATGTTGGGCCGTGCTGGACGACTAGACGAGGCAGAAGAGTTGATGCACCAGATTCCGGGAGGGCCTGGATTGTCTGCGTTGCAAAGTTTGCTTGGATCTTGTAGAATACATGGGAATCTGGAGATGGCCGAGAAAGTTGCTGGTAGTTTGATAGAAATGGACCCTGCAAGTTCAGGTCCATATGTGTTAATGGCAAACATGTATGCTGAGAAAGGGAAGTGGGAGAAAGTTTCTGAAATGCGAAGAAAGATGAGAGGGAGAGGAGTAAAGAAGGAAGTGGGATTTAGTTGGGTGGATGTTTCTAATGTTGACTCCTTGTATTTGCATAGTTTCTCCTCTGGGGATAAGTCACATCCAGAGAATGAGAATATTTGTAAAATGGCAGAGTTTCTGGGATTGCAAATGAATTTTTTGAAAGAGAGCAGAGAGAGGGAAGGAGAGTGGTGTCATGAGTAA 2319 0.4209 MRYPLKILHKVPLLLSFKHGSKRFHTLKHEHHLFDLILHPNAASVNRSMLNHLHNHLPFQALAAFKDQFHLHSLQNVDEVTLALSLKACQGELKLGCQIHGLLVSSGLVSLVSVSNSLMKLYCKSGNFGKALLVFENLSHPDMVSWNTVLSGFEESLEALLFARSMHFRGIVFDQVTYTTALSFCWGDHGILFGWQLHSLVVKCGFGCEVFIGNALVTMYSRWGMLDEARRVFDEMPKRDLVSWNAMISGYSQEGECYGLEAVLLFVNMLSNHILIDHISLTGAVSACGHMRNLELGRQIHGLTQKVGYGTHVSVCNVLMSTYSKCEVPNDAKAVFDGISNRNVVSWTTMISIDEEDAMSLFNAMRIDGVYPNDVTFIGLIHAVTIRNLVTEGLMIHGLCIKSCFLSEQTVSNSLVTMYAKFECIRESEKIFEELNCRETVSWNALISGYAQNGLYKEAFRTFLSAVEEITPSQYTFSSVLNAIAAAEDIPLKHGQRCHSYLLKLGLNTDPTVSGALLDMYGKRGNNIESQRVFDETLERTQYAWTAIISAYARHGDFETVMSLYTEMEREGISPDFITFLSVLTACCRKGMVDVGHRVFESMVKKHSIEPTSEHYSIMVDMLGRAGRLDEAEELMHQIPGGPGLSALQSLLGSCRIHGNLEMAEKVAGSLIEMDPASSGPYVLMANMYAEKGKWEKVSEMRRKMRGRGVKKEVGFSWVDVSNVDSLYLHSFSSGDKSHPENENICKMAEFLGLQMNFLKESREREGEWCHE* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0503 772 Pfam E motif 658 720 IPR046848 -
Pvu10g0503 772 Gene3D Tetratricopeptide repeat domain 354 512 IPR011990 GO:0005515
Pvu10g0503 772 Gene3D Tetratricopeptide repeat domain 54 186 IPR011990 GO:0005515
Pvu10g0503 772 Gene3D Tetratricopeptide repeat domain 513 739 IPR011990 GO:0005515
Pvu10g0503 772 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Pvu10g0503 772 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 439 469 IPR002885 -
Pvu10g0503 772 PANTHER OS07G0578800 PROTEIN-RELATED 24 468 IPR045215 GO:0003723|GO:0009451
Pvu10g0503 772 PANTHER OS07G0578800 PROTEIN-RELATED 553 765 IPR045215 GO:0003723|GO:0009451
Pvu10g0503 772 PANTHER OS07G0578800 PROTEIN-RELATED 470 556 IPR045215 GO:0003723|GO:0009451
Pvu10g0503 772 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Pvu10g0503 772 Pfam PPR repeat 609 638 IPR002885 -
Pvu10g0503 772 TIGRFAM PPR: pentatricopeptide repeat domain 543 576 IPR002885 -
Pvu10g0503 772 TIGRFAM PPR: pentatricopeptide repeat domain 441 465 IPR002885 -
Pvu10g0503 772 TIGRFAM PPR: pentatricopeptide repeat domain 214 242 IPR002885 -
Pvu10g0503 772 TIGRFAM PPR: pentatricopeptide repeat domain 578 612 IPR002885 -
Pvu10g0503 772 TIGRFAM PPR: pentatricopeptide repeat domain 616 638 IPR002885 -
Pvu10g0503 772 Pfam PPR repeat 116 136 IPR002885 -
Pvu10g0503 772 Pfam PPR repeat 214 240 IPR002885 -
Pvu10g0503 772 Pfam PPR repeat 413 435 IPR002885 -
Pvu10g0503 772 Pfam PPR repeat 242 257 IPR002885 -
Pvu10g0503 772 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 678 712 IPR002885 -
Pvu10g0503 772 Pfam PPR repeat family 543 589 IPR002885 -
Pvu10g0503 772 Pfam PPR repeat family 440 484 IPR002885 -
Pvu10g0503 772 PANTHER OS07G0670000 PROTEIN 470 556 - -
Pvu10g0503 772 PANTHER OS07G0670000 PROTEIN 24 468 - -
Pvu10g0503 772 PANTHER OS07G0670000 PROTEIN 553 765 - -
Pvu10g0503 772 Gene3D Tetratricopeptide repeat domain 188 308 IPR011990 GO:0005515
Pvu10g0503 772 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 611 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0503 Pvu-Chr10 7521054 7523372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0503 46 745 Glycoside Hydrolase AT3G49170 31.440 2.84e-111 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0503 - - cam:101513383 1179.47