Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0479 ATGTTCTGTAACTCCCAAATGGCGGCGTTTGCTAAACCCTCCCAACTTCATGCTCAAAGGGATAATCCCCTTCTTCCTTCTCCTACTTCCACCAACTGCAACCTCAAAGCTTTCACTTTTACGCACAACCTGCACACCCTTCATCCCCCTCTTAGAAAAGTTAAACATGTTTCTGTTTCAAGTTCTGCCGCTGCCACTACCTCCCTCAGCAACCACCACAGCCACGATGCAAACTCTGATATTTCCCAACTGTGCCTTCTTGGGAACTTGGACCGTTGCATGAGCTACTTAGACTCCATGCACCAGCTTCGAATTCTCGTTGAAGATGATACTTACGTTGCCTTGGTACGACTATGTGAGTGGAAGGGAGCAAGGAAGGAAGGGTCCCGTGTTTATTCCTATGTTTCCATGTCCATGACCCTTTTGAGCCTTCAACTGGGGAATGCGCTTTTGAGTATGTTTGTGAGGTTTGGGAACTTGGTGGATGCTTGGTATGTTTTTGGGAGAATGGAGAAAAGGAATTTGTTCTCTTGGAATGTTTTGATTGGTGGGTATGCTAAAGCTGGCTTCTTTGATGAGGCTCTGGACCTTTATCATAGAATGTTGTGGGTTGGTGAGAGGCCTGATGTTTACACTTTCCCTTGCGTTTTGAGGACTTGTGGTGGCATGCCTAACTTGATGAGGGGTAGAGAGATTCATGTGCATGTTGTAAGAAACGGGTTTGAGTCAGATGTGGATGTGCTTAATGCATTGATAACTATGTATGTGAAATGTGGGGATGTCAGTACTGCTAGGTTGGTGTTCGACAAAATGTCTAATAGAGATAGGATTTCGTGGAATGCCATGATTTCAGGGTATTTTGAAAACGGGGAGTGTTTGCAGGGATTGAGATTGTTTGTGATGATGATTGAATATCCTGTTGATCCAGATTTGATGACCATGACCAGTGTGATTACTGCATGTGAGCTTCTGGGTGATGAGAGATTGGGGAGGGAGATTCATGGTTATGTTCTTAGAATGGGGTTCGGGAGAGACCCTTCAGTTCATAATTCCTTAATTCAGATGTACTCATCTGTTGGACATATTCAGGAAGCTGAAACTGTTTTCTCTCGAACAGAATGTAGAGATGTGGTGTCATGGACTGCAATGATATCAGGTTACGAGAATTGTTTGATGCCTCAGAAAGCACTTGAGACATATAAAATGATGGAAGCAGAAGGTATCATGCCAGATGAAATCACCATAGCCACTGCACTCTCTGCTTGTTCTTGTATATGCAATTTAGACATGGGGACAGACCTTCATGAGACGGCCAAACAGACAGGGCTCATCTCTCATCCGATAGTTGGAAACACACTCATTGACATGTATGCCAAGTGTAAATTCATTGACAAGGCTTTGGAGGTTTTCCACTCTACTCTTGACAAGAACATTGTATCGTGGACATCAATCATCCTTGGTCTTCGGATCAACAACCGGTGTTTTGAAGCTTTATTTTACTTCAGGGACATGATTCTTAGACTGAAGCCAAACTCTGTTACTTTAGTTTGTATTCTGTCTGCATGTGCTAGAATAGGAGCTTTGACATGTGGAAAAGAGATTCATGCCCATGCTTTGAGAACTGGAGTAAGTTTTGATGGTTTTATGCCCAATGCAATTTTGGACATGTATGTAAGGTGTGGAAGAATGGGATATGCGTGGAAACAATTTTTCTCAGTTGATCATGATGTTACTGCATGGAACATTTTGCTTACAGGATATGCTGAGCATGGAAAAGGAGCACTTGCTTCTGAGGTTTTTCAGAGAATGGTAGAATCAAACATTAAACCTGATGAAATAACATTTATCTCCATATTATGTGCTTGCAGCCGATCAGGTATGGTAGCCGAAGGCTTAGAATACTTTAACAGCATGAAGTATAAGTACTCTATCACACCAAATCTGAAACACTATGCATGTGTGGTTGATTTACTTGGCCGTTCTGGGAAATTGGAGGAAGCTTATGAATACATACAGAAAATGCCACTGAAACCAGACGCAGCAATTTGGGGAGCTTTATTAAATGCATGTAGGATTCACCATCATGTTGAACTTGGAGAGCTTGCTGCAGAGAATATCTTTCAATACGATACAACAAGTGTTGGATACTACATTCTTCTCTCCAATCTTTATGCTGACAATGGTAAATGGGACAAGGTTGCTGAAGTAAGAAAAACAATGAGACAGAATGGGCTAATAGTAGATCCTGGATGCAGCTGGGTGGAGGTTAAGGGCACAGTGCATGCTTTCCTCAGTGGTGATAACTTTCACCCTCAAATAATGGAAATAAATGCTCTTTTGGAGCGGTTTTATAAGAAGATGAAGGAAGCTGGTGTTGAAGGGCCAGAAAACAGTCAGATGGACATAATGGAAGCTTCTAAGGCTGACATATTTTGTGGGCACAGTGAAAGACTGGCCATTGTCTTTGGACTTATTAATTCTGGCCCTGGGGTGCCTATTTGGGTGACAAAGAACCTGTACATGTGCCAAAATTGCCACAACATTATCAAATTTATCTCTAGGGAGGTTCGCAGAGAGATTTCTGTAAGGGATGCTGAACAATTGCACCAGTTCAGAGGAGGCATCTGCTCTTGCATGAATGAAGGATATAGGAGTTAA 2658 0.424 MFCNSQMAAFAKPSQLHAQRDNPLLPSPTSTNCNLKAFTFTHNLHTLHPPLRKVKHVSVSSSAAATTSLSNHHSHDANSDISQLCLLGNLDRCMSYLDSMHQLRILVEDDTYVALVRLCEWKGARKEGSRVYSYVSMSMTLLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLIGGYAKAGFFDEALDLYHRMLWVGERPDVYTFPCVLRTCGGMPNLMRGREIHVHVVRNGFESDVDVLNALITMYVKCGDVSTARLVFDKMSNRDRISWNAMISGYFENGECLQGLRLFVMMIEYPVDPDLMTMTSVITACELLGDERLGREIHGYVLRMGFGRDPSVHNSLIQMYSSVGHIQEAETVFSRTECRDVVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIATALSACSCICNLDMGTDLHETAKQTGLISHPIVGNTLIDMYAKCKFIDKALEVFHSTLDKNIVSWTSIILGLRINNRCFEALFYFRDMILRLKPNSVTLVCILSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMGYAWKQFFSVDHDVTAWNILLTGYAEHGKGALASEVFQRMVESNIKPDEITFISILCACSRSGMVAEGLEYFNSMKYKYSITPNLKHYACVVDLLGRSGKLEEAYEYIQKMPLKPDAAIWGALLNACRIHHHVELGELAAENIFQYDTTSVGYYILLSNLYADNGKWDKVAEVRKTMRQNGLIVDPGCSWVEVKGTVHAFLSGDNFHPQIMEINALLERFYKKMKEAGVEGPENSQMDIMEASKADIFCGHSERLAIVFGLINSGPGVPIWVTKNLYMCQNCHNIIKFISREVRREISVRDAEQLHQFRGGICSCMNEGYRS* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0479 885 Pfam PPR repeat 248 273 IPR002885 -
Pvu10g0479 885 Pfam PPR repeat 277 304 IPR002885 -
Pvu10g0479 885 Pfam PPR repeat 451 475 IPR002885 -
Pvu10g0479 885 Pfam PPR repeat 479 505 IPR002885 -
Pvu10g0479 885 Pfam PPR repeat 349 371 IPR002885 -
Pvu10g0479 885 Pfam PPR repeat 651 675 IPR002885 -
Pvu10g0479 885 Pfam PPR repeat family 174 220 IPR002885 -
Pvu10g0479 885 Pfam PPR repeat family 375 422 IPR002885 -
Pvu10g0479 885 Pfam PPR repeat family 576 623 IPR002885 -
Pvu10g0479 885 Gene3D Tetratricopeptide repeat domain 74 225 IPR011990 GO:0005515
Pvu10g0479 885 Gene3D Tetratricopeptide repeat domain 551 810 IPR011990 GO:0005515
Pvu10g0479 885 Gene3D Tetratricopeptide repeat domain 328 428 IPR011990 GO:0005515
Pvu10g0479 885 Gene3D Tetratricopeptide repeat domain 226 327 IPR011990 GO:0005515
Pvu10g0479 885 Gene3D Tetratricopeptide repeat domain 429 530 IPR011990 GO:0005515
Pvu10g0479 885 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Pvu10g0479 885 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Pvu10g0479 885 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 274 IPR002885 -
Pvu10g0479 885 Pfam E motif 693 755 IPR046848 -
Pvu10g0479 885 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Pvu10g0479 885 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 24 481 - -
Pvu10g0479 885 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 571 856 - -
Pvu10g0479 885 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 479 567 - -
Pvu10g0479 885 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Pvu10g0479 885 TIGRFAM PPR: pentatricopeptide repeat domain 378 412 IPR002885 -
Pvu10g0479 885 TIGRFAM PPR: pentatricopeptide repeat domain 277 310 IPR002885 -
Pvu10g0479 885 TIGRFAM PPR: pentatricopeptide repeat domain 176 202 IPR002885 -
Pvu10g0479 885 TIGRFAM PPR: pentatricopeptide repeat domain 248 274 IPR002885 -
Pvu10g0479 885 TIGRFAM PPR: pentatricopeptide repeat domain 579 612 IPR002885 -
Pvu10g0479 885 TIGRFAM PPR: pentatricopeptide repeat domain 451 479 IPR002885 -
Pvu10g0479 885 TIGRFAM PPR: pentatricopeptide repeat domain 148 174 IPR002885 -
Pvu10g0479 885 TIGRFAM PPR: pentatricopeptide repeat domain 613 647 IPR002885 -
Pvu10g0479 885 Pfam DYW family of nucleic acid deaminases 800 880 IPR032867 GO:0008270
Pvu10g0479 885 PANTHER BNAC05G11880D PROTEIN 479 567 - -
Pvu10g0479 885 PANTHER BNAC05G11880D PROTEIN 571 856 - -
Pvu10g0479 885 PANTHER BNAC05G11880D PROTEIN 24 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0479 Pvu-Chr10 6974805 6978034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0479 88 878 Glycoside Hydrolase AT3G49170 33.661 6.46e-151 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0479 - - gmx:100794338 1579.3