Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0438 ATGTATCAGTGGCGGAAGTTCGAATTCTTCGAGGAAAAGTACGGCGCCAAGTGCTCCGTTCCCGAGGGCGACGACGGAGACGACGTCGTCCGGGAGAAGAAGATCGAGTGCTGCTCCAGCGGTAGGGGCAAAGTCGTTACCGGCTTCGACGACGGCGTCGTTTGCTTCTTCGATCGCGGCTTAAAGTTCAATTACGCTTTCCAACCTCACTCCTCCAGCGTTCTCTTTCTTCAGCAACTCAAGCAACGCAATTTTCTGGTAACGATTGGGGGGGATGAGCAGCTTACTCCCCAGCAATCAGCTTTGTGCCTCAAGGTTTTTGACCTTGACAAGATGCAGCCGGAGAGTTCGAGCACAACGAGTCCTGATTGTGTTGGGATATTGCGGATATTCACTAATCAATTTCCTGAGGCAAAGATTACATCTTTTTTGGTTTTAGAAGAAGTGCCACCTATATTGCTCATAGCTATTGGTTTAGACAATGGTTCTATTTACTGCATCAAAGGAGACATTGCAAGGGAGCGTATCACGCGTTTCAGGCTTCAAGTTGAAAACAACCAATCGGACAAAACTCTTTCTGCTATCACTGGACTTGGGTTTAAGGTGGATGGTCAATCTCTACAGTTATTTGCAGTGACTCCAAGTTCAGTGAGCTTGTTTTCATTGCATAATCAACCGCCAAGAAGGCAAACCCTTGATCAGATTGGATGTGGTGTAAACAGTGTTGCTATGAGTGAACGCTCTGAGTTGATAATTGGTCGACCAGAGGCAGTATATTTTTATGAAATTGATGGGCGTGGTCCTTGTTGGGCTTTTGAGGGAGAGAAGAAATTGCTTGGATGGTTTCGTGGATACCTTTTGTGTGTTATTGCAGATCAAAGAACAGGAAAGCATACTTTCAACATCTATGACCTGAAGAATCGATTAATAGCCCACAGTGCATTGGTTAAAGAAGTTTCTCATATGCTTTATGAATGGGGTAACATCATACTCATAATGAATGACAAATCAGCTTTATGTATCGGAGAAAAGGATATGGAAAGCAAGTTGGACATGTTATTCAAGAAAAACCTATATACTGTAGCAATAAATCTTGTACAGACTCAACAAGCAGATGCTGCGGCTACTGCTGAAGTTCTAAGGAAATATGGGGATCATCTATATAGCAAGCAAGACTATGATGAAGCAATGGCCCAGTACATACTTACTATTGGTCACCTTGAACCTTCTTATGTTATACAGAAGTTTTTGGATGCTCAAAGAATCTACAACCTCACAAATTACTTAGAGAAGCTACATGAGAAGGGTCTTGCTTCTAAAGATCACACCACACTTCTATTAAACTGTTACACCAAATTGAAAGATGTTGAAAAGTTAAGTTTATTTATTAAAAGTGATGACAGCATTGGGGAACTTAAATTTGACGTGGAAACAGCAATCAGGGTTTGCCGTGCTGCCAATTACCATGAGCATGCAATGTATGTTGCAAAGAAGGCAGGGAGGCATGAATGGTACTTGAAGATCTTGCTTGAAGATCTGGGTAGCTATGAAGAAGCCTTGGAATATATTTCAAGCCTTGAATCAAGTCAGGCAGGCATGACAATAAAGGAGTATGGGAAGATTCTGATCGAGCACAAGCCAGTGGAGACTATTCAGATTCTCATTAGGCTTTGCACAGAAGATGGTGACAGAGGACGCTCAAATGGAGTGTATATGTCTATGTTGCCGTCTCCTGTTGATTTTCTTAGCATTTTCATTCATCATCCTCAGTCCCTTATGGATTTTCTAGAAAAATACACGAATAAGGTTAATGACTCACCTGCTCAAGTTGAGATTCATAATACCCTCTTAGAGTTGTATATATCCAATGAATTGAACTTTCCTTCAATGTCGCAAGTTAATGATGGTGGAAATTACCTTAATGGAGTATCAACAAAAACTATGAGTGTTCAGTCTAATGGAAGCACTGCTGATCACAAAAGTTCTGCACATGGAAAGGACTGTCTTGAAAGGCATAAAAAGGGTTTACACTTGCTTAAGAGTGCATGGCCTCCAGAGACAGAACATCCACAGTATGATGTTGATTTAGCAATTATACTATGTGAAATGAATGCATTCAAAGATGGACTTTTGTATATATATGAAAAGATGAAACTCTATAAAGAAGTAATTGCATGCTATATGCAGGCACATGATCATGAGGGGTTAATTGCATGCTGCCAACGGCTGGGGGATTCAGTTAAAGGAGGGGACCCATCTCTTTGGGCCGATGTACTTAAATATTTTGGTGAGCTTGGAGAAGATTGTTCTAAAGAAGTAAAAGAAGTTCTGACTTATATTGAGAGGGACGACATTTTGCCCCCTATAATTGTGCTTCAAACTCTCTCCCGAAATCCGTGCCTCACACTTTCTGTGATCAAAGATTACATTGCTCGAAAGCTTGAGCGGGAATCAAAGATGATAGAGGAGGACCGACAAGCTATTGATAAATATCAGGAAGACACACTGTCAATGAGAAAAGAGATTCAAGATCTTAGGACAAATGCTAGAATTTTTCAGCTTAGCAAGTGCACTGCATGCACCTTCACCCTTGATCTCCCTGCTGTGCATTTCATGTGCATGCACTCATTCCACCTGCGCTGCCTTGGCGATAATGAAAAAGAATGCCCTGAGTGTGCTCCTGAGTATAGGTCTGTCTTGGAAATGAAAAGAAATTTAGAGCAAAATTCTAAGGATCAGGATAGATTTTTCCACCAGGTGAAGAGCTCTAAAGATGGGTTTTCTGTCATTGCCGAATATTTTGGTAAAGGGATCATCAGCAAAACAAGTAATGGATCCACTTCTGGACCCAGATCCGGAACTGCATCATCCACTAGTGGTTTCTAA 2886 0.4151 MYQWRKFEFFEEKYGAKCSVPEGDDGDDVVREKKIECCSSGRGKVVTGFDDGVVCFFDRGLKFNYAFQPHSSSVLFLQQLKQRNFLVTIGGDEQLTPQQSALCLKVFDLDKMQPESSSTTSPDCVGILRIFTNQFPEAKITSFLVLEEVPPILLIAIGLDNGSIYCIKGDIARERITRFRLQVENNQSDKTLSAITGLGFKVDGQSLQLFAVTPSSVSLFSLHNQPPRRQTLDQIGCGVNSVAMSERSELIIGRPEAVYFYEIDGRGPCWAFEGEKKLLGWFRGYLLCVIADQRTGKHTFNIYDLKNRLIAHSALVKEVSHMLYEWGNIILIMNDKSALCIGEKDMESKLDMLFKKNLYTVAINLVQTQQADAAATAEVLRKYGDHLYSKQDYDEAMAQYILTIGHLEPSYVIQKFLDAQRIYNLTNYLEKLHEKGLASKDHTTLLLNCYTKLKDVEKLSLFIKSDDSIGELKFDVETAIRVCRAANYHEHAMYVAKKAGRHEWYLKILLEDLGSYEEALEYISSLESSQAGMTIKEYGKILIEHKPVETIQILIRLCTEDGDRGRSNGVYMSMLPSPVDFLSIFIHHPQSLMDFLEKYTNKVNDSPAQVEIHNTLLELYISNELNFPSMSQVNDGGNYLNGVSTKTMSVQSNGSTADHKSSAHGKDCLERHKKGLHLLKSAWPPETEHPQYDVDLAIILCEMNAFKDGLLYIYEKMKLYKEVIACYMQAHDHEGLIACCQRLGDSVKGGDPSLWADVLKYFGELGEDCSKEVKEVLTYIERDDILPPIIVLQTLSRNPCLTLSVIKDYIARKLERESKMIEEDRQAIDKYQEDTLSMRKEIQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHLRCLGDNEKECPECAPEYRSVLEMKRNLEQNSKDQDRFFHQVKSSKDGFSVIAEYFGKGIISKTSNGSTSGPRSGTASSTSGF* 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0438 961 Pfam Vacuolar protein sorting protein 11 C terminal 897 939 IPR024763 -
Pvu10g0438 961 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 400 551 IPR000547 GO:0006886|GO:0016192
Pvu10g0438 961 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 566 771 IPR000547 GO:0006886|GO:0016192
Pvu10g0438 961 ProSiteProfiles Zinc finger RING-type profile. 857 892 IPR001841 -
Pvu10g0438 961 Coils Coil 814 848 - -
Pvu10g0438 961 PIRSF Vps11 570 947 IPR016528 -
Pvu10g0438 961 PIRSF Vps11 1 573 IPR016528 -
Pvu10g0438 961 SUPERFAMILY RING/U-box 829 897 - -
Pvu10g0438 961 SUPERFAMILY WD40 repeat-like 37 254 IPR036322 GO:0005515
Pvu10g0438 961 CDD RING-H2_Vps11 855 895 - -
Pvu10g0438 961 Gene3D Tetratricopeptide repeat domain 341 632 IPR011990 GO:0005515
Pvu10g0438 961 Gene3D - 33 314 IPR015943 GO:0005515
Pvu10g0438 961 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 3 940 - -
Pvu10g0438 961 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 11 HOMOLOG 3 940 IPR016528 -
Pvu10g0438 961 Pfam Region in Clathrin and VPS 408 531 IPR000547 GO:0006886|GO:0016192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0438 K20179 - gmx:100778100 1821.59