Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0420 ATGTCCACTCTGCACCTTCACTCCGCTCCCACTCCTTCACCTTCCTTCGCTCCGATCACTTCTTCTCGCTTCTTCCGAACCTCTCGCATCTCGCTTCCAAACGCCGTCTGCTGCAAGGCGATAGAAGCAGTGCAGTTGGAGAACGGGAGGCCGAGCGCCAGAGAGTTTGCCGCCAGAGGAAACGCGATTCCGAGCTACGTCGAGGCGCCGAACGCGCGGATTCGGAATTTGGTTAACCGGAACGACACGCGTCTGAGGATATTCTCCGGCACCGCCAATCCCGCGCTTTCTCAGGAAATTGCGTGCTACCTGGGTCTGGAGCTCGGAAAAATTAAGATAAAGCGCTTTGCTGATGGTGAGATATATGTCCAGCTCCAAGAGAGTGTGAGGGGGTGTGATGTGTTTCTTGTGCAGCCCACATGTCCTCCTGCAAATGAGAATCTTATGGAGCTTCTCATAATGATTGACGCTTGCAGGAGAGCTTCAGCCAAAAATATTACTGCTGTCATTCCGTATTTTGGATATGCCAGAGCTGATAGAAAGACTCAAGGGCGTGAATCAATTGCTGCAAAGCTTGTAGCAAATTTAATTACAGAAGCGGGTGCAAATCGTGTACTTGCCTGTGATCTTCATTCTGGGCAATCAATGGGCTATTTTGATATTCCAGTTGATCATGTGTATGGACAGCCTGTCATTCTTGATTACCTTGCCAGCAAAACTATTTGCTCAGATGATTTGGTAGTTGTCTCGCCAGATGTTGGTGGGGTTGCCAGAGCACGTGCTTTTGCCAAAAAGTTATCTGATGCCCCCTTAGCTATTGTTGATAAAAGGCGTCATGGGCATAATGTTGCAGAGGTGATGAATTTGATAGGTGATGTAAGGGGAAAGGTAGCAGTTATGGTAGATGACATGATTGATACTGCTGGGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGGGAAGTCTATGCATGTACCACGCATGCTGTTTTCAGTCCTCCTGCTATAGAGAGGTTATCAAGCGGTTTGTTTCAAGAAGTTATCATAACTAACACAATTCCAGTGGCAGAACAGAACTATTTCCCCCAATTAACTGTACTGTCGGTGGCAAACCTTCTGGGCGAGACTGTATGGCGAGTTCATGATGATTGCTCAGGTGGAATTGAACCTTATTCAAGTTTGGGCATTGATTGA 1206 0.4768 MSTLHLHSAPTPSPSFAPITSSRFFRTSRISLPNAVCCKAIEAVQLENGRPSAREFAARGNAIPSYVEAPNARIRNLVNRNDTRLRIFSGTANPALSQEIACYLGLELGKIKIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTICSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVRGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACTTHAVFSPPAIERLSSGLFQEVIITNTIPVAEQNYFPQLTVLSVANLLGETVWRVHDDCSGGIEPYSSLGID* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0420 401 Pfam Phosphoribosyl synthetase-associated domain 286 389 IPR005946 GO:0000287|GO:0004749|GO:0009165
Pvu10g0420 401 Gene3D - 88 386 IPR029057 -
Pvu10g0420 401 Hamap Putative ribose-phosphate pyrophosphokinase [prs]. 85 395 IPR037515 GO:0004749
Pvu10g0420 401 SUPERFAMILY PRTase-like 150 386 IPR029057 -
Pvu10g0420 401 Gene3D - 228 371 IPR029057 -
Pvu10g0420 401 CDD PRTases_typeI 244 356 IPR000836 -
Pvu10g0420 401 TIGRFAM ribP_PPkin: ribose-phosphate diphosphokinase 86 388 IPR005946 GO:0000287|GO:0004749|GO:0009165
Pvu10g0420 401 ProSitePatterns Phosphoribosyl pyrophosphate synthase signature. 209 224 IPR000842 GO:0000287|GO:0004749|GO:0009156|GO:0044249
Pvu10g0420 401 SMART Pribosyltran_N_2 85 201 - -
Pvu10g0420 401 Pfam N-terminal domain of ribose phosphate pyrophosphokinase 85 201 IPR029099 -
Pvu10g0420 401 PANTHER RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 2, CHLOROPLASTIC 45 389 - -
Pvu10g0420 401 PANTHER RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER 45 389 IPR005946 GO:0000287|GO:0004749|GO:0009165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0420 Pvu-Chr10 5859119 5870447 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0420 K00948 - gmx:100816430 719.924