Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0388 ATGCAGAGACTAATCACTTGGATTTTGATTCTTTGCTTTGTTTCACCATTATGTTTTTGTGAGAGTTTGATGAGATCTACCAACACAAACAGTGTCATTGACAATGGTGCTACTGGTGATGGTAAAACTGATGATTCTCAGGCATTTTTAAGTGCATGGCAAAAGACATGCTCAGCAAAAGGGGCATCAACTCTAGTTATACCATCAAAAGTAGTATTCTTACTGAAGAAGAAGATAATCTTCAAAGGTCCTTGCCAAGCCACAAACATTAACATTCAGCTTCAAGGAAACATAACAGTAGCAACCCAGAGTGCATGGCTAGGTGATAAATCTACGATAATTTCGATCACAAACGTTAATGGTCTCACTATTGATGGAAGTGGAGGATCAATCGACGGCTCCGGTTCTTCTTGGTGGTCATGCAAAACGTGTCCACGACCATCGGTCCTTAGTTTCAATGCATGCAATAATCTTAGTGTTGCTAATTTGACTATCAGAAATAGTCCACAAGCTCACATAACCATAAATGGTTGTGTTGGTGCAACATTCTCTCGTATTACCATTGTGTCTCCTGGTGATAGTCCTAACACTGATGGAATTGACATTTCTTCTTCCAAAAATATCTTGATAAAAGAATCCAATATAGCTACTGGTGATGACTGCATTGCAATCATAGGTGACTCCTCTTTCATCAATGTTACTAGAATTTCTTGTGGACCAGGCCATGGAATAAGCATTGGTAGCCTGGGTAGAGACCAAGTCCATGACATGGTGGAACAAGTTTATGTACATAATTGCAGCTTCACCAAAACTACAAATGGAGCCAGAATCAAGACATTTCAGGGTGGACAAGGGTCTGCCAGAAACATCACTTATGAGGGAATTACATTAACACAGGTTTTCAACCCAATAATTATAAATCAAAACTATATGGAGTTAATGAGTGAAGGAGGAGGAGTTCAAGTGAGTGGGGTGACATTTCGAGGGTTTAAAGGAACATCTGCAGACGACAAAGCCATTACCTTAGCTTGCGGTTCACAAGGTTGTTTCAACATTGTGTTGGATCAAGTTAGCATTACATCTTCTCTACCAGGAAAACCAACTTCTTGTTCTTGTATGAATGCCCATGGAACAGCTACATCCACAGTTCCAAATTGTGCTTCCTTATTGAAATGA 1176 0.3971 MQRLITWILILCFVSPLCFCESLMRSTNTNSVIDNGATGDGKTDDSQAFLSAWQKTCSAKGASTLVIPSKVVFLLKKKIIFKGPCQATNINIQLQGNITVATQSAWLGDKSTIISITNVNGLTIDGSGGSIDGSGSSWWSCKTCPRPSVLSFNACNNLSVANLTIRNSPQAHITINGCVGATFSRITIVSPGDSPNTDGIDISSSKNILIKESNIATGDDCIAIIGDSSFINVTRISCGPGHGISIGSLGRDQVHDMVEQVYVHNCSFTKTTNGARIKTFQGGQGSARNITYEGITLTQVFNPIIINQNYMELMSEGGGVQVSGVTFRGFKGTSADDKAITLACGSQGCFNIVLDQVSITSSLPGKPTSCSCMNAHGTATSTVPNCASLLK* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0388 391 Pfam Glycosyl hydrolases family 28 57 378 IPR000743 GO:0004650|GO:0005975
Pvu10g0388 391 Gene3D - 22 389 IPR012334 -
Pvu10g0388 391 PANTHER - 1 387 - -
Pvu10g0388 391 SUPERFAMILY Pectin lyase-like 14 388 IPR011050 -
Pvu10g0388 391 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 387 - -
Pvu10g0388 391 SMART pbh1 287 308 IPR006626 -
Pvu10g0388 391 SMART pbh1 205 226 IPR006626 -
Pvu10g0388 391 SMART pbh1 317 344 IPR006626 -
Pvu10g0388 391 SMART pbh1 258 279 IPR006626 -
Pvu10g0388 391 SMART pbh1 178 204 IPR006626 -
Pvu10g0388 391 SMART pbh1 155 177 IPR006626 -
Pvu10g0388 391 ProSitePatterns Polygalacturonase active site. 235 248 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0388 Pvu-Chr10 5457216 5463011 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0388 1 386 Glycoside Hydrolase AT5G17200 40.855 3.27e-96 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0388 K01184 - gmx:100820332 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0388 10 5457216 5463011 Pvu10g0388 10 5457216 5463011 ECH