Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0387 ATGCAAATTGTAATAACTTGTTTTTTTATCTTAGGTTGTTTTGCACCATGTATGTTTGGGAGGTCAATGGTTGGAATTCAAAGTACATCTTACAATGTGGTGAACTATGGTGCTCATGGCAATGGAGAATCTGATGATTCCCAAGCCATTTTAAGTGCATGGAAAGAGGCATGTGGAACAGAAGGGACATCAACTCTAGTTATACCACAAAATAGAGTATTCATGGTGAAGAACATAAACCTGAGTGGTCCTTGCAAGGCCACAAGTATTCATATGCAGCTTGAAGGGAAAATAGTTGCACCTCAGAAGAATGAATGGACAAACTATCTGAAAGTTGACGATGAGTCCTCTTTGATTTCAATCTCAGACGTAAATGGTCTGAGAATTGATGGAAATGGAGAAATCAATGGGTTTGGTTCTGCTTGGTGGAAATGCCCTTCTTGTCAAAGGCCAAAGGTTATTAGTTTCCAAAATTGCAATGATCTGAGAGTTAGTTATCTGAGCATCATTGATAGTCCACGAGCTCACGTAGCAATAGATGGTTGCAGCAATGCTGTCTTCTCCAATATCAATATTCATGCTCCTGCCAACAGCCCCAACACTGATGGATTTGACATTTGTGCTTCAAAATATATCACCATTCAAGATTCCATTATAGGAACTGGTGATGATTGTATTGCCATCAATGGTGGCTCCTCCTTCATCAATGCTACAGGAATTGCATGTGGACCAGGCCATGGAATAAGTGTTGGCAGCCTGGGAAAAAATGGTGTGCATGACACAGTTGAACAAGTTTATGTACGAAATTGCAGCTTCACAAACACCCAAAATGGAGCAAGAATCAAGACATGGCAGGGTGGATCAGGTTATGCAAGAAAAATCACTTTTGAGAAGATCACATTAACAAAGGCTTTCAACCCTATAATTATAGACCAGAACTATGGTTATGATGATTTCGAGAGTGATGCAGTGGAAGTGAGTGAGGTGACATTCAGAGGGTTTGAAGGAACAAGTGGAGATGAGAAAGCTATTGACCTAAGTTGCCACTCACCAGTTTTTATAAATGTTATCCTCGAACTCTAA 1083 0.4007 MQIVITCFFILGCFAPCMFGRSMVGIQSTSYNVVNYGAHGNGESDDSQAILSAWKEACGTEGTSTLVIPQNRVFMVKNINLSGPCKATSIHMQLEGKIVAPQKNEWTNYLKVDDESSLISISDVNGLRIDGNGEINGFGSAWWKCPSCQRPKVISFQNCNDLRVSYLSIIDSPRAHVAIDGCSNAVFSNINIHAPANSPNTDGFDICASKYITIQDSIIGTGDDCIAINGGSSFINATGIACGPGHGISVGSLGKNGVHDTVEQVYVRNCSFTNTQNGARIKTWQGGSGYARKITFEKITLTKAFNPIIIDQNYGYDDFESDAVEVSEVTFRGFEGTSGDEKAIDLSCHSPVFINVILEL* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0387 360 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 359 - -
Pvu10g0387 360 ProSitePatterns Polygalacturonase active site. 239 252 IPR000743 GO:0004650|GO:0005975
Pvu10g0387 360 SUPERFAMILY Pectin lyase-like 26 352 IPR011050 -
Pvu10g0387 360 Pfam Glycosyl hydrolases family 28 58 351 IPR000743 GO:0004650|GO:0005975
Pvu10g0387 360 Gene3D - 23 358 IPR012334 -
Pvu10g0387 360 Coils Coil 356 360 - -
Pvu10g0387 360 PANTHER - 1 359 - -
Pvu10g0387 360 SMART pbh1 209 230 IPR006626 -
Pvu10g0387 360 SMART pbh1 291 312 IPR006626 -
Pvu10g0387 360 SMART pbh1 262 283 IPR006626 -
Pvu10g0387 360 SMART pbh1 182 208 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0387 Pvu-Chr10 5442461 5444869 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0387 31 353 Glycoside Hydrolase AT5G27530 49.848 1.85e-100 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0387 K01184 - gmx:100782390 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0387 10 5442461 5444869 Pvu10g0387 10 5442461 5444869 ECH