Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0166 ATGAACCAAGGAGGAACATCCTTCTTCTTTTCTAACTTTCCCTTCGATCTCAGAGAATTAGACTTGTGGAAAATTTTTAGAAGATGGGGAAGGGTGAACGATCTTTTTATATCTAACAGATTAAATATCAAGAAGCAGCGGTTTGGTTTTGTAAGATTTCAAGGAGTCCAGAACATTAAGGAGTTAGAATATCATCTAAACACAATATGGATCGGGAGCTGGAAGTTGAATGTAAATAGGCCAAAATACAACAGGGCAACAGATACAAGAAAGGAATGGAACGTCAAGCTGAAGGAGAAGGTCACAGTGGCTGAGAAAGAAACCAAAAAAGAATGGAGGGAAAAAGGATCAAACACGTACGCAAACGCCGTTACGCATGGTTATAGAAGTAGAGCACAAACACAGAATAAAGAAAATGTGCATGCTATACACTTTAGAGCAGAGGAAACTCCCAGAGAGTGGCTAAGAAAGTGTTATATTGGGAGAGTCTCGGATCTTAGCAAGGTATCTAGCCTAAATGAAAGTCAAATTTATGGGGGTTTCCATGTGCTGTTGAAGGGGGAAAATGAGACGAAGATCAACGAAGCCATAGCGGAGAATAAAGACTGGTTTGAAGAATTGTTTGATACAATCATTCCTTGGGAAGAACAATTTGTTGCAGTGGATAAATTGGTTTGGGTGAGATGCAGGGGCTTACCACTGAAGCTATGGAACTTTGATTGTTTCAAGCACATAGCAGCGCTACTGGGAACCCTGGTCGAGATTGATGAGGCAACTTTGGCACTGGAAGAGCTTGAGTACGCAAGGTTCAAAATCAGAGTTCCAGTGGGATGTGAGGCGAAGATAACCAGTTATATGAAGATCAACGAGGTATTGTATCAAGTATCGGTGGAGGAAGAGAGCACTGTTCCAGACTATAAATTGTGCCAATGCCATTGGACCGAAGGATCAGAAGGTATGGATTCAGAGGAGGGCTCAATTGCTTCAAACGTTTCGGCACGCTTGGGGAGTAGGGATTTCGAGGATGGAAGTAAGGTGGCGGAGGAGAATTTGATGGTGGAACCCATCGTTACGGTGGATGGTAGCGAGGCTATTTCAGATAGACCAATAGGTTCTCTCTCTGTACCTAATTTCAGTACAATCATAAGAAAGGATGACCTAGGGGCTAATTCTCCAACGACTCTAAGTAGGGCTGACGTGGACAAGAGGATTGGGCTTCCAGAATTGGCCCAAGATGGTCTGGTCTACGCAACCTGTGCGGAAAAGGGAGGGGGGTGCGAAAGGAAAATTTTTTTGGAGGCCTTGTCGAAATCCGGCCCAACCGTCTATAGTGAGGAGAAACTTTGGAATGGGTCACTTGGAAGGCTGCCCACATCTGAAAACTTCATTTCTCTTGATGAATTAGAGCAGAGAGGTCTTAGTGGGATTGACAAAGTCACCTCACACCAAGTCAATGCACGAAACAGAGCAACATCCGTGCTCCCCTCTATTTCGTTTGAGGTTACGAAGGAGAAGAGGAGGTCTACCCCGTGTACGACGAATTTGGCAGCGGAAGGAATTGCAGACCTAGAGACTCAAATCTCGACGCCAGCGGAAGGGAATAAAGGGGGTTTTCACGGTTCTTCAAAGTCCGTATCGAGGGTGGAGGATTCGTTGGCGAACCACCAAAAAAAGCACGTATGCAATTCGATCAATTCTAATTCGTTTGAAACGATGGATAGGAGAGTGTTCTGGGTGGGAGAATCAAGCAAGAGCAGTAAGCGGGACGAACGTAAGAATATAAGGTCAACTCTATCTCAAATTAGTAATTCTGTTTCTGATACAGCCATTGATAACTGTAATAGTTTATTTTGGTTGAAACATGGAAGCCTTGAAACAATTAGAGTGTGGGAGTTGGCCAAACAGTTAGGGGCTTCTTGCGGGGAAGAAGGAAAAGTTATG 1941 0.4405 MNQGGTSFFFSNFPFDLRELDLWKIFRRWGRVNDLFISNRLNIKKQRFGFVRFQGVQNIKELEYHLNTIWIGSWKLNVNRPKYNRATDTRKEWNVKLKEKVTVAEKETKKEWREKGSNTYANAVTHGYRSRAQTQNKENVHAIHFRAEETPREWLRKCYIGRVSDLSKVSSLNESQIYGGFHVLLKGENETKINEAIAENKDWFEELFDTIIPWEEQFVAVDKLVWVRCRGLPLKLWNFDCFKHIAALLGTLVEIDEATLALEELEYARFKIRVPVGCEAKITSYMKINEVLYQVSVEEESTVPDYKLCQCHWTEGSEGMDSEEGSIASNVSARLGSRDFEDGSKVAEENLMVEPIVTVDGSEAISDRPIGSLSVPNFSTIIRKDDLGANSPTTLSRADVDKRIGLPELAQDGLVYATCAEKGGGCERKIFLEALSKSGPTVYSEEKLWNGSLGRLPTSENFISLDELEQRGLSGIDKVTSHQVNARNRATSVLPSISFEVTKEKRRSTPCTTNLAAEGIADLETQISTPAEGNKGGFHGSSKSVSRVEDSLANHQKKHVCNSINSNSFETMDRRVFWVGESSKSSKRDERKNIRSTLSQISNSVSDTAIDNCNSLFWLKHGSLETIRVWELAKQLGASCGEEGKVM 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0166 647 SUPERFAMILY RNA-binding domain, RBD 4 84 IPR035979 GO:0003676
Pvu10g0166 647 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 7 339 - -
Pvu10g0166 647 SMART rrm1_1 7 79 IPR000504 GO:0003723
Pvu10g0166 647 CDD RRM_SF 9 79 - -
Pvu10g0166 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 61 IPR000504 GO:0003723
Pvu10g0166 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 83 IPR000504 GO:0003723
Pvu10g0166 647 Pfam Domain of unknown function (DUF4283) 179 272 IPR025558 -
Pvu10g0166 647 Gene3D - 1 91 IPR012677 -
Pvu10g0166 647 PANTHER RNA RECOGNITION MOTIF 7 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0166 Pvu-Chr10 2565258 2567413 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0166 - - pvu:PHAVU_010G016100g 1269.22