Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01857 ATGGAGTTCGACCCGATCCCAATCGGTTCGTGCTCCAGGGAACACCAGACGATCTATAAGGAGTGGTTCAATTACGCTGATTCAGATAGCGATGGCCGCATTACGGGGAGTGATGCCACCAAGTTTTTCGCCATGTCCAATTTGTCTCGTGAAGATCTTAAGCAGGTGTGGGCTATTGCAGATTCAAAGCGACAAGGATATCTTGGTTTCACTGAATTTATCATTGCTATGCAGCTAGTTTCTTTGGCTCAATCTGGGCATTCAATAACACCCGATCTGCTGACTAGTGATGTTGATTTTACAAATCTGAAACCTCCCACAATGGAGGGTTTGGACGTATTACTGGTTAAGAAAAAGCATAAACATAAAGAGGTTGATACAAATGGTAGTTCTCAATTGCAGCCATCACTATCAAGTAATTGGTTTTCTTCAAAGTCAACAAAAAAGGTGCCTCTTTCCTCTGTGACATCAATAATTGATGGCTTGAAGAGACTCTACATTCAGAAGTTGAAGCCGTTAGAAGTTACTTACCGTTTTAATGATTTTGTATCCCCATTACTGACAAATAGTGACTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGTAAAACAACATTTATCAAGCATCTGCTTAAAAGTAGTTATCCAGGAGCACATATTGGACCTGAGCCAACAACTGATAGGTTTGTTGTTGTCATGTCTGGATCTGATGAGAGAAGCGTTCCTGGAAATACTGTTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGCACAGCATTTTTGTCAAAATTTGTGTGTTCACAAATGCCTCATCCCCTACTGGAACACATCACATTTGTTGACACTCCTGGAGTTTTATCTGGAGAAAAGCAACGTACACAACGAGCATATGATTTTACGGGTGTAACATCTTGGTTTGCTGCTAAGTGTGATTTGATACTCCTTTTGTTTGATCCTCACAAACTTGATATCAGTGATGAGTTCAATCGTGTGATATCATCCTTACGGGGGCATGATGACAAAATCCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAATTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAGACACCTGAAGTGATGCGAGTGTATATTGGCTCCTTCAATGACAAGCCTGTAAATGATGCTGCCACTGGTCCACTTGGTAAGGAACTCTTTGAAAAGGAACAGGATGATCTTCTCTCAGATCTGAAAGATGTACCAAAAGCAGCTTGTGATCGAAGAATCAATGAGTTTGTAAAACGGGCCCGAGCAGCCAAGATACATGCTTACATTATCAGTCATCTTAAAAAGGAGATGCCTGCTATGATAGGCAAAGCTAAAGCTCAACAAAAGCTCGTTGATAATTTGGCAGCTGAATTTGGAAAGGTACAAAGGGAGTTCCACTTACCTCCTGGAGATTTTCCAAACGTAGAGTATTTCAGAGAGAGATTGAGTGGTTACAATATTGATAAGTTTGAAAAATTGAAAGCAAAAATGATACAAGCAGTTGATGACATGTTAGCTTACGACATTCCTAATCTCTTGAAGAATTTTAGGAATCCCTATGATTAA 1632 0.4069 MEFDPIPIGSCSREHQTIYKEWFNYADSDSDGRITGSDATKFFAMSNLSREDLKQVWAIADSKRQGYLGFTEFIIAMQLVSLAQSGHSITPDLLTSDVDFTNLKPPTMEGLDVLLVKKKHKHKEVDTNGSSQLQPSLSSNWFSSKSTKKVPLSSVTSIIDGLKRLYIQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLKSSYPGAHIGPEPTTDRFVVVMSGSDERSVPGNTVAVQADMPFSGLTTFGTAFLSKFVCSQMPHPLLEHITFVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFNRVISSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLKTPEVMRVYIGSFNDKPVNDAATGPLGKELFEKEQDDLLSDLKDVPKAACDRRINEFVKRARAAKIHAYIISHLKKEMPAMIGKAKAQQKLVDNLAAEFGKVQREFHLPPGDFPNVEYFRERLSGYNIDKFEKLKAKMIQAVDDMLAYDIPNLLKNFRNPYD 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01857 543 Gene3D - 10 109 - -
Pumo9g01857 543 Pfam Cytoskeletal-regulatory complex EF hand 19 80 IPR000261 GO:0005515
Pumo9g01857 543 FunFam EH domain-containing protein 1 198 426 - -
Pumo9g01857 543 ProSiteProfiles EH domain profile. 15 98 IPR000261 GO:0005515
Pumo9g01857 543 Gene3D - 198 426 IPR027417 -
Pumo9g01857 543 Gene3D - 162 534 - -
Pumo9g01857 543 CDD EH 19 85 IPR000261 GO:0005515
Pumo9g01857 543 Pfam Domain of unknown function (DUF5600) 433 534 IPR040990 -
Pumo9g01857 543 CDD EHD 197 441 - -
Pumo9g01857 543 Pfam N-terminal EH-domain containing protein 161 193 IPR031692 -
Pumo9g01857 543 SMART eh_3 8 103 IPR000261 GO:0005515
Pumo9g01857 543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 465 IPR027417 -
Pumo9g01857 543 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Pumo9g01857 543 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 192 430 IPR030381 GO:0005525
Pumo9g01857 543 PANTHER EH DOMAIN 14 540 - -
Pumo9g01857 543 SUPERFAMILY EF-hand 12 94 IPR011992 -
Pumo9g01857 543 Pfam Dynamin family 198 357 IPR045063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01857 Pumo-Chr9 47723854 47730797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01857 1 543 EF-hand Containing Proteins AT3G20290 83.670 0.0 931
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01857 K12483 - gmx:100804468 1053.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01857 9 47723854 47730797 Pumo9g01857 9 47723854 47730797 ECH