Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01855 ATGGATATCAAAATGGAAGAAAAAAAGATAATGCACTACAGTAGTCGCCAGAAGATATTGCTCGTGGGAGAGGGAGATTTCTCCTTTTCACTTTCTTTGGCGACGGCATTTGGCTCTGCTTCAAACATGGTAGCAACTTCCCTTGATTCCAGAGGGAAATACTCAAGGGCTTTAACAAACTTAAACGAATTGGAGAACCTTGGTTGCACCATTGTGCATGAAGTGGATGCTCATACAATGAATATGCACCCGCTTCTCCAAACCAAGTGTTTTGATCGCATTGTCTTCAATTTTCCACATGCTGGATTTGTTCATCGTGAATGTGATCTGTGGCAGATTGAGCTTCACAAGCATGTGGTGTCGGGGTTTTTGAAGAGTGCAAGCAAGATGATAAGCCAAGATGGCGAAATTCACGTGACACACAAAACTACCAGTCCTTTCTGTAAATGGGAAGTAGTGACGCTGGCAGAGGAAGCAGAGTTATTCTTGGTTGAGAAGGTGCCGTTTTTTAGAAAGGACTATCCGGGTTACATTAATAAGAGAGGATCCGGACCTAAATGCAACAAAACTTTTCGTGTTGGTAATTGCAGCACTTTCAAATTTTCCAAGCTGATTCCTGTTCAAGTCAATTTGTTACTGCCACCGATAAATTCATTATCAGCTCCAAGATTTGGGTTTTCTTCATCAACTTCTAATGACAAGGAAAAAGGGAATAATGTGCATAGTGGAGATTCTACAAATGATGTCCCTGCAAAAGCAAATGAAGAGGCGGAGAATATTGATCAGGCCGGACAAGCTAAACCTGCAGATAAAACGGAGGAATCAGGTTCAGAGAGTGAATGTAACCTATCCAGGGATGATTTAATTAAACTTGTGTCTGAGAAGGAAGGACTTGTGAAGTTAAAACACAAGGAGATTGAAAAAATGCAGGATAAAGTTCTGTGTACTTATGCAGAGATGGAGAATGTCATGGAAAGGACTAGACGTGAAGCAGATAATTCAAAAAAATTTGCTATACAGAATTTTGCAAAGAGTTTACTAGATGTTGCGGACAATTTGGGAAGAGCTTCCTCAGTTGTAAAGGAAAGTTTCTCAAAAATTGATACACCTAGTGACTCAGCTGAAGTGGTAAAACTGCTGAAAACACTTCTGCAAGGTGTTGAAATGACCGAGAAACAATTATCAGAGGTACTTAAAAAGTTTGGTGTAGAAAAATTTGATCCTACGAATGAGCCCTTTGATCCACACAGGCATAATGCCATCTTCCAAATCCCTGATGGTTCTAAGCCTCCAGGGACTGTTGCAGCTGTTCTGAAGGCAGGATATATGCTTTATGACCGTGTTATTCGCCCAGCAGAAGTTGGTGTAACCCAAACAGTCGAGGATGAAGAGAATAATGGAAAAGATAACATAGCTGATAAGGGCTCCTAG 1431 0.4081 MDIKMEEKKIMHYSSRQKILLVGEGDFSFSLSLATAFGSASNMVATSLDSRGKYSRALTNLNELENLGCTIVHEVDAHTMNMHPLLQTKCFDRIVFNFPHAGFVHRECDLWQIELHKHVVSGFLKSASKMISQDGEIHVTHKTTSPFCKWEVVTLAEEAELFLVEKVPFFRKDYPGYINKRGSGPKCNKTFRVGNCSTFKFSKLIPVQVNLLLPPINSLSAPRFGFSSSTSNDKEKGNNVHSGDSTNDVPAKANEEAENIDQAGQAKPADKTEESGSESECNLSRDDLIKLVSEKEGLVKLKHKEIEKMQDKVLCTYAEMENVMERTRREADNSKKFAIQNFAKSLLDVADNLGRASSVVKESFSKIDTPSDSAEVVKLLKTLLQGVEMTEKQLSEVLKKFGVEKFDPTNEPFDPHRHNAIFQIPDGSKPPGTVAAVLKAGYMLYDRVIRPAEVGVTQTVEDEENNGKDNIADKGS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01855 476 Gene3D - 289 401 IPR013805 -
Pumo9g01855 476 Pfam rRNA (uridine-N3-)-methyltransferase BTM5-like 20 181 IPR019446 GO:0070042|GO:0070475
Pumo9g01855 476 Pfam GrpE 286 457 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pumo9g01855 476 MobiDBLite consensus disorder prediction 227 249 - -
Pumo9g01855 476 Gene3D Head domain of nucleotide exchange factor GrpE 402 457 IPR009012 GO:0006457
Pumo9g01855 476 MobiDBLite consensus disorder prediction 267 282 - -
Pumo9g01855 476 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 403 458 IPR009012 GO:0006457
Pumo9g01855 476 Hamap Protein GrpE [grpE]. 232 458 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pumo9g01855 476 FunFam GrpE protein homolog 402 458 - -
Pumo9g01855 476 MobiDBLite consensus disorder prediction 227 282 - -
Pumo9g01855 476 MobiDBLite consensus disorder prediction 457 476 - -
Pumo9g01855 476 PRINTS GrpE protein signature 314 330 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pumo9g01855 476 PRINTS GrpE protein signature 437 456 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pumo9g01855 476 PRINTS GrpE protein signature 410 425 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pumo9g01855 476 CDD GrpE 307 456 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pumo9g01855 476 FunFam GrpE protein homolog 286 401 - -
Pumo9g01855 476 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 296 402 IPR013805 -
Pumo9g01855 476 PANTHER GRPE PROTEIN 251 460 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pumo9g01855 476 MobiDBLite consensus disorder prediction 462 476 - -
Pumo9g01855 476 ProSitePatterns grpE protein signature. 413 456 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01855 Pumo-Chr9 47710246 47715325 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01855 K03687 - gmx:100803396 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01855 9 47710246 47715325 Pumo9g01855 9 47710246 47715325 ECH