Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01846 ATGGAGCTGTGCACTCGAACCTTCACAAGTTTCCTTCTTTTCAACCCTTCTTTCTCTTCAAACTCTCTTTTTCTTCGTGCTAATGCCAACGCTGCAACACCCTTCAAATTCAATTCCCTTAAACTCTTATCCTTTTCGCCTCATATTCATCTCTTTCAACCCTTTCTCTCTCCTCACAATTCTTCTCCCTTCACACTCTCAGCTGCTTCTTCCTCTTCCTCAGTTGCAGTTGGCACAGAACAGGACCGTCTTCCAGCAGAACTGAAGGTCACTGAAACAGAGGAACCCAATTCCAGAGTTAGATTGCATGTGGAGGTGCCATCATTGGTATGTGAGGATTGTTACAAAAGGGTCATAGCAGAGTTTATGAAGCAAGCAAAGATCCCTGGATTTCGCCCTGGAAAGAAAGTTCCCGAAAGCATTCTTATTAGTTATGTTGGGAGTCAAAATGTTCAGAAGGCTACTATTGAATCTATATTGAGGAGGACACTTTCACATGCTATGACATCGGTTACTGGAAGGGCTTTGCAGGACTCAGTACGAATTGTGACTAAGTTTTCTGAGATGGAGGAGACATATTCTTCTCTTGGGTCTCTTAGATATGATGTCATTGTTGATATTGCACCAGAAATCAAATGGATTCCTGATAATAATGCATACAAAAATTTAAAGATTGTTGTTGAGATAGATAGTGATATAGATGCTCACAGAGCATCTGAACAAGAATTTAGAAGGCGTTACAAGTCCATTGGTGCACTGAAAGTGGTTACTGGCAGAGGGCTACAGGTTGGTGATGTTGTTGTCCTTGACATCTCAGCAACAACCATTGATCAAGATGAATCAAATGTTAAAAGTATTCCTTCTGCTGAAAGTAAAGGCTTTAATTTTGATACAGAAGATGGTGACAAAGTATTACCGGGTTTCCTTGATTCTATAATTGGAATTCAACAAGGCGAATCAAAGTCTTTTCCTCTTGTATTTCCTGAAACATGGAAGCAAGAAAATCTTCGTGGTGTTCATGCTCAGTTTACTGTTGAGTGCAAAGAACTTTTTTACAGAGATTTACCAGAGCTGGATGATTCTATTGCTGATAAGCTTCTCCCTGGATGCACCACAGTGGAGCAGGTCAAAGACTTGTTATTACAGAGATGCCTAGAGGTGGAGCAAACAGCTAGAGAACAAGCAACTGATAATGCTATCTTAGATCAGATTTCTAAGATGGTAGAAGTTGATATACCTCAATCCTTGTTTGAGGAGCAAGGTAGGCAGCTTTATGGAGCCAACCTATTAGAAATACAGGCAAAAATGAAACTAAATGAGCAGCAGCTGGCGACTCTGTCAAGTCCGAAGGCTGTGAACGAATATCTTGAGCATCAGAAGGAAAATATAACAAATTTAATAAAACAGAATCTGGCTGTTGGTGACATATATAGGCGTGAAAATCTGCAGTTTGCTACTGAGGACCTCCTCAAAGAGGTTGAGAATTCCATTGTTGAATTCAAACGTCAAAAACAAGAATACGATGAGGAACGGGTGAAGGAACAGGTTTGCACCATCTTTCTGAGTTTGTTTACTGTTGTTTATAGGTTTGGCTGCTTCATTGTTTCATACATGCATATACAGAACTACTAA 1632 0.4013 MELCTRTFTSFLLFNPSFSSNSLFLRANANAATPFKFNSLKLLSFSPHIHLFQPFLSPHNSSPFTLSAASSSSSVAVGTEQDRLPAELKVTETEEPNSRVRLHVEVPSLVCEDCYKRVIAEFMKQAKIPGFRPGKKVPESILISYVGSQNVQKATIESILRRTLSHAMTSVTGRALQDSVRIVTKFSEMEETYSSLGSLRYDVIVDIAPEIKWIPDNNAYKNLKIVVEIDSDIDAHRASEQEFRRRYKSIGALKVVTGRGLQVGDVVVLDISATTIDQDESNVKSIPSAESKGFNFDTEDGDKVLPGFLDSIIGIQQGESKSFPLVFPETWKQENLRGVHAQFTVECKELFYRDLPELDDSIADKLLPGCTTVEQVKDLLLQRCLEVEQTAREQATDNAILDQISKMVEVDIPQSLFEEQGRQLYGANLLEIQAKMKLNEQQLATLSSPKAVNEYLEHQKENITNLIKQNLAVGDIYRRENLQFATEDLLKEVENSIVEFKRQKQEYDEERVKEQVCTIFLSLFTVVYRFGCFIVSYMHIQNY 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01846 543 FunFam Trigger factor 254 356 - -
Pumo9g01846 543 Pfam Bacterial trigger factor protein (TF) 89 228 IPR008881 GO:0006457|GO:0015031
Pumo9g01846 543 Hamap Trigger factor [tig]. 88 536 IPR005215 GO:0015031
Pumo9g01846 543 Coils Coil 490 510 - -
Pumo9g01846 543 SUPERFAMILY Triger factor/SurA peptide-binding domain-like 358 511 IPR027304 -
Pumo9g01846 543 PANTHER TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE 60 514 IPR005215 GO:0015031
Pumo9g01846 543 Gene3D - 86 213 IPR036611 GO:0006457|GO:0015031
Pumo9g01846 543 SUPERFAMILY Trigger factor ribosome-binding domain 88 215 IPR036611 GO:0006457|GO:0015031
Pumo9g01846 543 Gene3D - 220 489 IPR037041 GO:0006457|GO:0015031
Pumo9g01846 543 Gene3D - 249 356 IPR046357 GO:0003755
Pumo9g01846 543 FunFam Chloroplast trigger factor 329 527 - -
Pumo9g01846 543 Pfam Bacterial trigger factor protein (TF) C-terminus 372 517 IPR008880 GO:0006457|GO:0015031
Pumo9g01846 543 FunFam Trigger factor 88 211 - -
Pumo9g01846 543 SUPERFAMILY FKBP-like 254 359 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01846 K03545 - gmx:100812597 924.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01846 9 47608020 47613357 Pumo9g01846 9 47608020 47613357 ECH