Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01463 ATGGCCATGGCTCTTCGCAGACTCTCCTCCACCCTCAACAAACCTTTCTCCAACGCCACTTCCATTTATCGCACGTCCTCGTCGCTCTCCGCTCACGAGAAAGACAAATCTCGCGCCGATTGGATAAAGCAGCTCAACGATCCCCTCGAGGCCATCGATCCCGAGATCGCCGACATAATCGAACTCGAAAAAGCGCGTCAATGGAAGGGGTTCGAACTTATACCTTCGGAAAATTTCACGTCGCTGTCGGTGATGCAAGCCGTTGGATCGGTGATGACGAATAAATACAGCGAAGGATATCCCGGTGCTAGATACTATGGAGGAAATGAGTACATTGACATGGCTGAGACCTTGTGTCAGAAGCGTGCACTTGAAGCTTTTCGGTTGGATCCAGCAAAATGGGGAGTCAATGTGCAATCATTATCTGGATCCCCTTCTAACTTCCAAGTTTACACTGCTTTATTGAAACCTCATGAGAGAATTATGGCACTTGATCTTCCCCATGGTGGGCATCTATCGCATGGTTATCAGACTGACACCAAGAAGATATCAGCTGTATCTATATTCTTTGAAACAATGCCATACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAGTTGGAGAAAAGTGCAACACTCTTTAGGCCAAAATTAATAGTTGCTGGCGCTAGTGCTTATGCTCGCCTTTATGATTATGAACGTGTTCGCAAGGTCTGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGTGGATTGGTTGCTGCAGGTGTTATTCCTTCTCCTTTTGATTATGCAGATGTTGTAACAACCACAACACATAAGTCACTTCGTGGACCACGTGGGGCTATGATCTTCTTCAGGAAGGGTGTGAAAGAGATAAACAAGCAAGGGAAGGAAGTGTTGTATGACTATGAAGACAAAATAAATCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCACACAATCACACTATTGCAGGCTTAGCAGTTGCACTGAAGCAGGCTATGACACCAGAATTCAAGAATTACCAAAAGCAAGTACTTAGGAACTGCTCAGCATTTGCACAGAGTTTGTTAGAGAAAGGCTATGAACTTGTATCTGGTGGAACTGAGAACCATTTAGTGTTAGTGAACTTAAGAAACAAGGGCATTGATGGTTCTAGGGTTGAGAAGGTACTAGAAGCAGTTCATATAGCTGCAAATAAAAATACCGTTCCAGGGGATGTGTCTGCTATGGTTCCTGGAGGCATTCGAATGGGAACCCCTGCTCTCACATCTAGGGGATTTGTTGAGGAAGATTTTAAAAAAGTAGCTGAGTACTTTGATGCAGCTGTCAAGTTAGCCTTGCAGATTAAGGAAAATACCAATGGTACAAAGTTGAAGGATTTTGTGGCAGCTATGCAATCAGATGAACAAATTCAATCCAAGATTGCTAATCTCCGTCATGAAGTAGAGGATTATGCTAAGCAGTTTCCCACTATTGGTTTTGACATAGAAACAATGAAGTATGGTAAGTGA 1536 0.4368 MAMALRRLSSTLNKPFSNATSIYRTSSSLSAHEKDKSRADWIKQLNDPLEAIDPEIADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERVRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDYEDKINQAVFPGLQGGPHNHTIAGLAVALKQAMTPEFKNYQKQVLRNCSAFAQSLLEKGYELVSGGTENHLVLVNLRNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFKKVAEYFDAAVKLALQIKENTNGTKLKDFVAAMQSDEQIQSKIANLRHEVEDYAKQFPTIGFDIETMKYGK 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01463 511 FunFam Serine hydroxymethyltransferase 78 351 - -
Pumo9g01463 511 CDD SHMT 53 473 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Pumo9g01463 511 Hamap Serine hydroxymethyltransferase [glyA]. 48 501 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Pumo9g01463 511 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 272 288 IPR019798 GO:0030170
Pumo9g01463 511 Gene3D - 78 351 IPR015421 GO:0003824
Pumo9g01463 511 Gene3D Aspartate Aminotransferase, domain 1 53 498 IPR015422 GO:0003824
Pumo9g01463 511 PIRSF SHMT 30 506 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Pumo9g01463 511 SUPERFAMILY PLP-dependent transferases 40 503 IPR015424 -
Pumo9g01463 511 Coils Coil 476 496 - -
Pumo9g01463 511 Pfam Serine hydroxymethyltransferase 49 446 IPR039429 -
Pumo9g01463 511 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 34 503 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Pumo9g01463 511 FunFam Serine hydroxymethyltransferase 339 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01463 Pumo-Chr9 42154676 42162353 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01463 K00600 - gmx:100816213 976.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01463 9 42154676 42162353 Pumo9g01463 9 42154676 42162353 ECH