Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01424 ATGCGTGTCACCATCGATCTAGGGTTTTGGAGCCTGGTCCTCGTCGCGGTGGTCTTCCTCGTCGCGCCGGCGATCAGCTTTGTTGTCCTTCGCCGGTGCCGGCGCGCGGCGGCCAGGGCGGAGGAGATCAAGAGGCTCCTAGTTCTCGCCGAGGAGGAGTCCGGTAGGGCCGAGACCGAGGCCTCGTACTACCAATACGGCGTCGTTTCGGCACCACCGAAGAACAAACTATGCGCCGTGTGTTACTCTCCCACCACCACGCGGTGCGCAAGGTGCAAAGCGGTTAACTACTGTTTGCTGAGTGATATAGCTGACATGACGGTCCAATCCATATTACTGAGTTTTCAATTCATTGATTTTTATCTGCAGATTTCTGGAAAGTGCCAAATTGTTCATTGGCGTCAAGGTCACAAAGACGAATGCCATCCTCCCAGCCCAACTTGCCAGACTGATGATCTGGTAAGTGATCTTGGAAAGAAGGTAGCAGAACCAGACTACCGTGGAATCCATGATGAGAAGTCTAAGATTAAAAGCACAGAGTATGCAACATCATCTGAGAAACCCCCGTTGTCTGATCTGAGCGGTTCTCCGGATATTTCACATGCAAAGGATGATAGTGTAAGAGTTGAGTCTCTTCAAGAGGGAAATGTTACAGGCTCTAATTCTGAATTATCTAGTAACTCATTCTCTGGATTCTCAGCTTCCACTGGTGCTAGTGAATCATCTGATGATTCTTCTGTCTGTGAGAGTATCACCTCGAATGAGCATGAGAAATGCGAGGGACATATTTTTGTGGACCCCACCAATGACATTTCTGATACCACTTCAAGTTGTAATAGCATTGGTGAATCCATTCCATTATCACCTAAGTTTGCTAGTGTGGTTGATTCAGTTGGTGGATATCCTGCAATCCATAAATTAAATCAAGTTAGACCTTGTTTTGGTAAAGAAGAGAGTAAGCTCACATCAAATGGTAGTTCTGGTTTGCGTATGCGGAAAGGGGCAACAATTGAGCCTTCAACAGTATCTTCTGGATTCTGGAATAGTACTCTTGATTCAACGAGGATAAAAGATGACCCTAATAGTGACCCTCTTTCATCCCAGTCTGATGATTCTCCTCCAAAGTCAGTTGAGAACAATATGCCATGTGCAGGATCAGCATCTTCAGAGAATGAGTGTGTTGATTCTTCAGGTTGTGCTGATGCTTTGAGCATCCATAATTTGCAAACAGTTGGTTCTAGGGTATCAAATCATGTTGTCAACCCTGGTAGCACCTTGAAGTCAGCTGAAAGTAGATGTCTGCCACATGCATTTGCTGATACGAAGTTAGTTTCTAGAACTGAAGAGCATTCACATTATAGTACAAAATGTGGGAACAATGACATCCAATCTGGCACTTGTACTTCATCTCAGGTTGTTAGCTCTACAAATTCTAAGAATGACCTGAAAACATCTGTTCTAAAAGGTTCTGATCAGTTTAGAGGATCAAAGTTGTCTAAACCCTTTCCATCAGCCGTTGGCAGTGATATTACTGGAAAATACAGTGACAAGGGTCTTTTTCCATATGATTTGTTTGTCAAGCTTTATAACTGGAACAGGGTGGAGTTGCAACCATTTGGTCTTATAAACTGTGGAAACAGCTGTTATGCTAATGCTGTACTCCAGTGCTTGGCATTTACACCACCCCTGACTGCTTATTTGCTTCAAGGACTTAATTCTAAATCATGTGCAAATAAAAAATGGTGTTTCACCTGTAAGTTTGAAAGTTTGATTTTGAAGTCAAAAGACACAAAATCTCCCATCTCACCTGTGGGCATACTCTCTCAACTACAGAATATTGGGAGTCAACTTGGTAATGGAAGAGAAGAAGATGCACATGAATTTCTAAGGCTTGCTGTAGAGACAATGCAATCTGTTTGCCTTATGGAATCTGGGGATAACATGTCTGACTCATTGAAAGAGGAAACTAATTTAATGGGCCTAACATTTGGAGGTTACCTTCAATCAAAGATAAAATGCATGAAATGTGGAGGGAAATCTGAACGTCAAGAAAGGATGATGGATCTGACAGTTGAGATAGAAGGGGAGATAGCAACACTGGAGGAGGCCCTTCGACAGTTTACAAGCGCTGAGACTCTGGATGGAGAAAACAAGTACCACTGTGTTAGGTGTAAATCTTATGAGAAGGCCAAGAAGAAAATGACAGTTTCAGAGGCACCTAATGTTCTTACAATTGCATTAAAGAGATTTCAGTCGGGAAAATTTGGGAAGCTCAATAAACCTATTCGGTTTCCTGAAATACTGGACTTGGCACCTTTCATGAGTGGGACTAGTGATTTGCCTATATACAGGTTATATGGGGTAGTTGTTCACCTGGATACCATGAATGCTGCTTTTTCGGGTCACTATGTGTGCTATGTGAAGAATTTCCAAAGCAGGTGGTTCAAGGTTGATGATAGTGTGGTAACAGCTGTTGAAATGGAAAGTGTTTTGGCAAAAGGAGCATACATGCTTTTTTATGCAAGGTGCTCACCTAGGGCCCCAAGATTAATCAGGAACAGTATAGTATCTTCAGATTCAAAATGGAAAGGAAAAACTGCGACAATAATGAAGTCGAGACGACTATCTACCGGTGCTGGTGTTAATTTGACTTCTCCAGACGGTTCACCCTCCTTAGATACCATCTATTCGAAGTTCCTCCACTCTAGAAGGATTTTGGAAGAAGACTCGTCAAGTGATAATTCATCCCTTATCAGCAGCAATTCTGATGAAGGTTCTTGCAGTACAGATAGCACGAGCGATTCAACCAGTACAGATGAGTTTGCTGATTATATTCTTGGTGATTTGGGACGTGGCGCAGGTGGCATGTTAAGAAATTCTGATTCCAACACTTCCCCTGCATTGTCATCTTCTCCCCACTCTAGATATTTTCCCTCTTATGATATAGACCAACATGATTCAGTTTTGCCACATTCAACTGGGTTGCAGCCACCTCCCCCAGGTCTTTTGTACAGGAACAGAGTAGTGGATGTTAAAAGGAGTGGGGGAAGTGTTTCTCATTTTCATCCTGACACAAATATAGAGCATAGGAAATTAGATACAAGTAGGAGTAGCAGTAGTTTTAGGGTGACTGACTCTGTACAGAGAGCAGGATCCAATCATTTTAATGATAGAAATTCTGGTGTATCATGTATAAAGTCAAGGGACAGAACGGATTGA 3219 0.4284 MRVTIDLGFWSLVLVAVVFLVAPAISFVVLRRCRRAAARAEEIKRLLVLAEEESGRAETEASYYQYGVVSAPPKNKLCAVCYSPTTTRCARCKAVNYCLLSDIADMTVQSILLSFQFIDFYLQISGKCQIVHWRQGHKDECHPPSPTCQTDDLVSDLGKKVAEPDYRGIHDEKSKIKSTEYATSSEKPPLSDLSGSPDISHAKDDSVRVESLQEGNVTGSNSELSSNSFSGFSASTGASESSDDSSVCESITSNEHEKCEGHIFVDPTNDISDTTSSCNSIGESIPLSPKFASVVDSVGGYPAIHKLNQVRPCFGKEESKLTSNGSSGLRMRKGATIEPSTVSSGFWNSTLDSTRIKDDPNSDPLSSQSDDSPPKSVENNMPCAGSASSENECVDSSGCADALSIHNLQTVGSRVSNHVVNPGSTLKSAESRCLPHAFADTKLVSRTEEHSHYSTKCGNNDIQSGTCTSSQVVSSTNSKNDLKTSVLKGSDQFRGSKLSKPFPSAVGSDITGKYSDKGLFPYDLFVKLYNWNRVELQPFGLINCGNSCYANAVLQCLAFTPPLTAYLLQGLNSKSCANKKWCFTCKFESLILKSKDTKSPISPVGILSQLQNIGSQLGNGREEDAHEFLRLAVETMQSVCLMESGDNMSDSLKEETNLMGLTFGGYLQSKIKCMKCGGKSERQERMMDLTVEIEGEIATLEEALRQFTSAETLDGENKYHCVRCKSYEKAKKKMTVSEAPNVLTIALKRFQSGKFGKLNKPIRFPEILDLAPFMSGTSDLPIYRLYGVVVHLDTMNAAFSGHYVCYVKNFQSRWFKVDDSVVTAVEMESVLAKGAYMLFYARCSPRAPRLIRNSIVSSDSKWKGKTATIMKSRRLSTGAGVNLTSPDGSPSLDTIYSKFLHSRRILEEDSSSDNSSLISSNSDEGSCSTDSTSDSTSTDEFADYILGDLGRGAGGMLRNSDSNTSPALSSSPHSRYFPSYDIDQHDSVLPHSTGLQPPPPGLLYRNRVVDVKRSGGSVSHFHPDTNIEHRKLDTSRSSSSFRVTDSVQRAGSNHFNDRNSGVSCIKSRDRTD 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01424 1072 MobiDBLite consensus disorder prediction 1037 1062 - -
Pumo9g01424 1072 Pfam Ubiquitin carboxyl-terminal hydrolase 539 840 IPR001394 GO:0004843|GO:0016579
Pumo9g01424 1072 Gene3D - 77 147 - -
Pumo9g01424 1072 MobiDBLite consensus disorder prediction 955 1002 - -
Pumo9g01424 1072 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 283 846 - -
Pumo9g01424 1072 MobiDBLite consensus disorder prediction 910 939 - -
Pumo9g01424 1072 MobiDBLite consensus disorder prediction 1015 1072 - -
Pumo9g01424 1072 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 540 555 IPR018200 GO:0004843|GO:0006511
Pumo9g01424 1072 MobiDBLite consensus disorder prediction 340 388 - -
Pumo9g01424 1072 Gene3D Cysteine proteinases 532 852 - -
Pumo9g01424 1072 MobiDBLite consensus disorder prediction 911 939 - -
Pumo9g01424 1072 FunFam Ubiquitin carboxyl-terminal hydrolase 15 533 851 - -
Pumo9g01424 1072 MobiDBLite consensus disorder prediction 211 249 - -
Pumo9g01424 1072 MobiDBLite consensus disorder prediction 168 249 - -
Pumo9g01424 1072 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 539 843 IPR028889 -
Pumo9g01424 1072 Coils Coil 33 60 - -
Pumo9g01424 1072 SUPERFAMILY Cysteine proteinases 535 846 IPR038765 -
Pumo9g01424 1072 MobiDBLite consensus disorder prediction 957 977 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01424 Pumo-Chr9 41575961 41582396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01424 519 869 Miscellaneous Gene Families AT4G31670 49.575 1.09e-120 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01424 K11855 - gmx:100782303 1698.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01424 9 41575961 41582396 Pumo9g01424 9 41575961 41582396 ECH