Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01401 ATGAGAAGGTTCACGTGGTTCACGCCGTATCGGCGCCATTTGCTTTCGTCTCTGACTTCAGAATCGCTCGTGGATAAAGGAGAATCATCGTTCAGCAAGTCTCGCCAATCGGTTTTGCTCGCTCGAGCTTTGGTCAATTGCGGTTTCGTCACGAAAACGGAGGAGTCTCTGATTCCGAGAGTACCGTTAAGATATCGTTATTTTCATGCCACAGCGTTTTCATCTTCGGCTGACCGAGACTACTATCGAGTTCTTGGTGTTCCTGAAAATGCCAGTCAGGACGAGATAAAGAAGGCATTTCACTCGCTTGCTAAAATGTACCATCCAGATGCAAATAAGAATAACCCATCTGCTAAGAGGAAATTTCAAGATATAAGAGAAGCTTATGAGACGTTGAGAGACTCTAAAAAGAGAGCAGAGTATGACAAGATGCGTACTCGTGGTTCGGAAGACAGAGAATATGATCATGATGATGCAGAAAGGTTTAGAAATGCTTATCGTTCTCATTTTTCTGATTCATTTCATAAAGTATTCTCTGAGATATTTGAAGAAGCAACAACTCAATTCTCATCAAATACAGAGGTGGAGTTGTCTCTTACTTTCTCAGAAGCAGCGAGAGGATGCACCAAACATGTGTCATTTGATGCATTGGTTCCCTGCGATTATTGCAATGGGCAGGGCTATCCACTTGATGCCATCCCAAAAGTTTGTCCAACATGCAGGGGCTTAGGTCGAGTTACAATCCCCCCATTTACGTCAACATGCATTACTTGTAAAGGATCAGGCCGCATCATTAAGGACTTTTGTATAACGTGTGGAGGATCTGGGGTGGTTGAAGGGGTTAAAGAGGTTAAAGTTACAATACCAGCAGGTGTGGATTCAGGAGATACAATCCATGTGCCAGAAGGTGGGAATGCTGCTGGAAGTGGAGGTCGACCTGGAAGTTTATACATTAAAATAAAGGTGGCTGAGGATTCAATCTTTGTCAGAGATGGTGCAGATATCTACGTGGATTCTAATATTAGCTTTACACAGGCTATTCTTGGTGGCAAAGTTGAGGTGCCTACTTTATCTGGGAAGATGCAGTTAAAAATACCCAAGGGTGTTCAACATGGACAGCTTCTAGTATTAAGAGGCAAAGGACTACCAAAGCATGGATATCTTGTACATCATGGGGATCAGTATGTACGATTCCGTGTTAACTTTCCCATTGAAATCAATGAACGACAACGTGCTATACTTGAAGAACTTGCAAAGGAGGAAATAAAGGAGGGAAACAGCTCTTCATTTGAAGGAAATTGGTGGCAGCAAATTCTTGAACACACAACGGGTCCAAAGTTTATGCTGGAACTATCTATGCTGATATTATTCCTTCTCTTCATTAACAAAATGTTGAACTGA 1401 0.4233 MRRFTWFTPYRRHLLSSLTSESLVDKGESSFSKSRQSVLLARALVNCGFVTKTEESLIPRVPLRYRYFHATAFSSSADRDYYRVLGVPENASQDEIKKAFHSLAKMYHPDANKNNPSAKRKFQDIREAYETLRDSKKRAEYDKMRTRGSEDREYDHDDAERFRNAYRSHFSDSFHKVFSEIFEEATTQFSSNTEVELSLTFSEAARGCTKHVSFDALVPCDYCNGQGYPLDAIPKVCPTCRGLGRVTIPPFTSTCITCKGSGRIIKDFCITCGGSGVVEGVKEVKVTIPAGVDSGDTIHVPEGGNAAGSGGRPGSLYIKIKVAEDSIFVRDGADIYVDSNISFTQAILGGKVEVPTLSGKMQLKIPKGVQHGQLLVLRGKGLPKHGYLVHHGDQYVRFRVNFPIEINERQRAILEELAKEEIKEGNSSSFEGNWWQQILEHTTGPKFMLELSMLILFLLFINKMLN 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01401 466 Gene3D - 324 431 - -
Pumo9g01401 466 FunFam Molecular chaperone DnaJ 323 431 - -
Pumo9g01401 466 ProSitePatterns Nt-dnaJ domain signature. 122 141 IPR018253 -
Pumo9g01401 466 Gene3D - 192 321 - -
Pumo9g01401 466 Hamap Chaperone protein DnaJ [dnaJ]. 77 425 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Pumo9g01401 466 CDD DnaJ_C 191 403 - -
Pumo9g01401 466 Gene3D - 216 249 - -
Pumo9g01401 466 Gene3D - 250 284 - -
Pumo9g01401 466 ProSiteProfiles dnaJ domain profile. 80 145 IPR001623 -
Pumo9g01401 466 Gene3D DnaJ domain 77 191 IPR036869 -
Pumo9g01401 466 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 207 278 IPR036410 -
Pumo9g01401 466 SUPERFAMILY HSP40/DnaJ peptide-binding domain 328 414 IPR008971 GO:0006457|GO:0051082
Pumo9g01401 466 ProSiteProfiles Zinc finger CR-type profile. 207 281 IPR001305 GO:0031072|GO:0051082
Pumo9g01401 466 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 37 424 - -
Pumo9g01401 466 CDD DnaJ 80 134 IPR001623 -
Pumo9g01401 466 SUPERFAMILY HSP40/DnaJ peptide-binding domain 192 323 IPR008971 GO:0006457|GO:0051082
Pumo9g01401 466 SUPERFAMILY Chaperone J-domain 76 175 IPR036869 -
Pumo9g01401 466 Pfam DnaJ central domain 220 276 IPR001305 GO:0031072|GO:0051082
Pumo9g01401 466 Pfam DnaJ C terminal domain 194 403 IPR002939 -
Pumo9g01401 466 Pfam DnaJ domain 80 142 IPR001623 -
Pumo9g01401 466 PRINTS DnaJ domain signature 100 115 IPR001623 -
Pumo9g01401 466 PRINTS DnaJ domain signature 117 137 IPR001623 -
Pumo9g01401 466 PRINTS DnaJ domain signature 82 100 IPR001623 -
Pumo9g01401 466 PRINTS DnaJ domain signature 137 156 IPR001623 -
Pumo9g01401 466 SMART dnaj_3 79 137 IPR001623 -
Pumo9g01401 466 Coils Coil 404 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01401 Pumo-Chr9 41101510 41119149 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01401 80 175 Miscellaneous Gene Families AT1G16680 33.010 9.34e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01401 - - gmx:100809440 809.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01401 9 41101510 41119149 Pumo9g01401 9 41101510 41119149 ECH