Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01360 ATGTCAGGTGGTGGATGCAGCATAGTGTGGTTCAGGAGAGATCTGAGGGTGGAGGATAACCCTGCACTGGCTGCAGGAGTGAGAGCAGGAGCTGTGGTTTGTGTTTTCATTTGGGCTCCTGAGGAAGAGGGTCAATACTACCCTGGCAGGGTCTCTAGGTGGTGGCTCAAACAAAGTTTGGCTCACCTTGATTCCTCTTTGAGAAGCCTTGGCTCCCCTCTAATCACCAAGCGTTCCACTAATAGTGTTTCTTCTCTCTTGGAGGTTATTAAGTCCACTGGGGCTACCCAACTCTTTTTCAACCATTTATATGATCCGTTGTCACTTGTGAGAGATCACAGAGCAAAGGAGGTTCTGACGGCTCAAGGCATTACCGTACGATCCTTCAACTCAGACCTCTTGTATGAACCATGGGATGTGAACGATGCTCATGGCCAACCATTCACAACTTTTTCTGCTTTTTGGGAAAGATGCCTTAGCATGCCTTATGACCCACAAGCACCTCTTCTCCCACCTAAAAGGATTATTCCAGGTGATGTATCAAGGTGCCCAAGTGATACATTGGTGTTTGAAGACGAATCAGAGAAGGCGAGCAACGCGCTTCTTGCTCGAGCATGGTCACCGGGGTGGAGCAATGCAGACAAGGCATTGACAGCATTCATAAACGGTCCTCTGATCGAGTACTCGAAGAATCGCAGGAAGGCAGACTCTGCCACAACCTCATTTCTCTCACCACATTTGCACTTTGGTGAGGTGAGTGTGAAGAAAGTGTTCCACCTTGTCCGCATCAAGCAAGTGTTTTGGGCCAATGAAGGAAACAAGGCTGGTGAAGAGAGTGTGAACTTGTTTCTCAAGTCTATTGGTCTCAGAGAGTATTCAAGGTACATTAGTTTCAACCACCCCTATAGTCATGAAAGGCCCCTTCTAGGCCACCTTAAGTTTTTCCCTTGGGTGGTGAATGAAGGGTACTTTAAGGCTTGGAGACAAGGCAGAACAGGGTACCCTTTGGTGGATGCTGGAATGAGAGAGTTGTGGGCAACTGGTTGGTTGCATGATCGTATACGTGTTGTGGTTTCGAGTTTCTTTGTGAAGGTGCTGCAGCTTCCTTGGAGATGGGGAATGAAGTATTTCTGGGATACACTTTTGGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATATCTGGTACTCTCCCTGATGGTCGCGAATTTGACCGAATAGATAATCCGCAGTTTGAGGGGTACAAATGTGACCCAAATGGAGAATATGTACGACGCTGGCTTCCTGAACTTGTTAGATTACCAACTGAATGGATACACCATCCATGGAATGCACCAGAGTCTGTACTCCAAGCTGCTGGAATTGAACTTGGTTCAAATTATCCTCTTCCCATTGTGGGAATAGATGCAGCAAAAGTAAGATTGCAAGAAGCACTTGTACAAATGTGGCAACAAGAAGCAGCTTCAAGAGCTGCAATGGAAAATGGAACCGAGGAAGGGCTTGGAGACTCATCTGAATCAACCCCTATTGCTTTTCCTCAAGACATACAAATGGAGGAAAGGCCTGAACCTGTTAGGAACAACCTGCCTCACGGTACTCGGCGCTACCAGGATCAGATGGTCCCAAGTATCACTTCTTCCTTTGTGAGAGTGGGAGAAGAAACATCTTCAGACCTTCGAAACTCGGCCGCAGACAGCAGAGCTGAAGTGCCTATAAATGTGACCACACAACAAAATGCAAGAGAGACAGTGAATCAAGGAGTGTTACAGAATGCAAATAGAAACACTCAAGTACAAAATAATGCTACAATGTGGCTGAGAAATGCAGCTGAAGATTCCACAGCAGAATCTTCAAGTAGTACTAGGAGAGAAAGGGATGGGGGAGTAGTTCCAGTATGGTCTCCCCCAGCTTCTAACTTCTCAGAACAATTTGTAGATGATGAAAATGGTATAGGAGCCAGTTCATCTTACTTGCAAAGGCAGCATCCTCAGTCTCATCAATTGATGAACTGGACGCGGCTACCTCAGACTGGGCTTCTTCAAGATCCATAA 2058 0.4655 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVCVFIWAPEEEGQYYPGRVSRWWLKQSLAHLDSSLRSLGSPLITKRSTNSVSSLLEVIKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAPLLPPKRIIPGDVSRCPSDTLVFEDESEKASNALLARAWSPGWSNADKALTAFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDPNGEYVRRWLPELVRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLQEALVQMWQQEAASRAAMENGTEEGLGDSSESTPIAFPQDIQMEERPEPVRNNLPHGTRRYQDQMVPSITSSFVRVGEETSSDLRNSAADSRAEVPINVTTQQNARETVNQGVLQNANRNTQVQNNATMWLRNAAEDSTAESSSSTRRERDGGVVPVWSPPASNFSEQFVDDENGIGASSSYLQRQHPQSHQLMNWTRLPQTGLLQDP 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01360 685 NCBIfam cryptochrome photoreceptor 6 481 IPR014134 GO:0009785|GO:0009882
Pumo9g01360 685 PRINTS DNA photolyase signature 352 370 IPR002081 -
Pumo9g01360 685 PRINTS DNA photolyase signature 332 348 IPR002081 -
Pumo9g01360 685 PRINTS DNA photolyase signature 391 405 IPR002081 -
Pumo9g01360 685 PRINTS DNA photolyase signature 143 159 IPR002081 -
Pumo9g01360 685 PANTHER CRYPTOCHROME 6 490 IPR002081 -
Pumo9g01360 685 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 194 488 IPR036134 -
Pumo9g01360 685 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Pumo9g01360 685 FunFam Cryptochrome 1 8 148 - -
Pumo9g01360 685 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Pumo9g01360 685 Gene3D - 134 293 - -
Pumo9g01360 685 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Pumo9g01360 685 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 178 IPR036155 -
Pumo9g01360 685 Gene3D HUPs 8 206 IPR014729 -
Pumo9g01360 685 Pfam Blue/Ultraviolet sensing protein C terminal 511 624 IPR020978 -
Pumo9g01360 685 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Pumo9g01360 685 MobiDBLite consensus disorder prediction 612 650 - -
Pumo9g01360 685 Pfam FAD binding domain of DNA photolyase 283 480 IPR005101 -
Pumo9g01360 685 FunFam Deoxyribodipyrimidine photo-lyase 301 490 - -
Pumo9g01360 685 Pfam DNA photolyase 7 163 IPR006050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01360 Pumo-Chr9 40400195 40406365 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01360 K12118 - gmx:100786551 1332.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01360 9 40400195 40406365 Pumo9g01360 9 40400195 40406365 ECH
Pumo9g01360 9 40400195 40406365 Pumo10g01138 10 14616028 14624849 PCT