Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01178 ATGCCACCTTCCCCTTCCTTCCCTTCAGAGAACCGAAGCAAATGGAGGAAGAAGCGCAGGAGAGAATCCTACAAGCGCAACCAAAAGCGTCACGACGAGGACGATTCCGACGACGACAACAACGAACCCGACTCCGACGACTCCGACGACCAATTCCGCGGCCCTAGCTCCCAATTCGCGGACCCGCGCGTGGAGATCGAGGTGGTGTCGCACGACGGAGTCCAGATTTCGCAGTTCCCGCCGGCGATCAGGCGCGCCGTGACCCGCCCCCACGCGGCGGTCGCGGCGATTGCGGCGCTGGAGGCCGGCGACTGCAGGGGGCAGTCGCAGCACGGCGTTCCGGTTCTGGAGAATGTGTCGCACGGCCAGCTTCAGGCGCTGTCGGCGGTGTCCGCCGATTGCCTCGGCGGCGGCTCGAGCTTCGTCGTTGCTCCGCCGCCGGTTTTGAAGGGTTCCGGCGTCGTTAAGCGGTTCGGGAGTAGGGTTCTTGTAGTTCCTATGCATTCAGATTGGTTTTCTCCAACCTCAGTGCATCGACTTGAGAGACAAGCAGTGCCACATTTCTTCTCTGGAAAGTCGCCAGATCATACACCAGAGAAGTACATGGAATTTAGGAACTACATTGTTGCAAGATACATGGAGGACCCAGGGAAGAGGATTACAGTCTCTAGTTGCCAGGCATTGTCAGTTGGTGTTGGTAATGAAGATTTAACTCGAATTGTCAGGTTCCTTGATCACTGGGGAATTATCAATTACTGTGCTGAGGGCCAAAGTCGTGAGAATTCGGACAATGAGACTTACCTGAAGGAGGACACAAGTGGTGCAATATGTGTGCCATCAGCAGCTTTAAGATCCATAGATAGTTTGGTCGAATTTGACAAGCCCAAGTGTAAATTCAAAGCAGATGAAATTTATTCATCTCGAACAATGCGCAATACTGATATTTCTGATTTGGATGACAGAATAAGAGAGCATCTATCTGAAAACCATTGCCATTATTGTTCTCGTTCTCTTCCTGTTGTATACTACCAATCACAAAAAGAGGTTGATATTTTACTCTGCACTGATTGCTTTCATGATGGGAGATTTGTCACTGGTCATTCTAGTATAGATTTTATAAGGGTGGATTCAACTACAGATTATGGTGATCTAGATGGGGATAGTTGGACTGATCAAGAGACTTTGCTGCTGCTTGAAGCAGTGGAGGTTTACAATGAGAATTGGAATGAAATTGCTGAGCATGTTGGCACCAAGTCAAAAGCGCAATGCATTCTTCATTTTCTCCGTTTACCTGTAGAAGATGGAAAGTTGGAAAATATCAATGTTTCAAGTTTGTCTTTGTCATCCAATGTGAAGAATCAAGAGGATAATGGAAGATTGCATTGTTGCTCAAATGGGGATTCTGCTGGACCTGTACATAACAGCCAAGATTCTGATGGCAGGCTTCCTTTTGCAAATTCTGGAAATCCAGTTATGGCACTGGTTGCCTTTTTAGCCTCTTCTGTTGGACCAAGAGTAGCTGCAACTTGTGCTCATGCAGCATTAGCTGCATTGTCAGGGAATAATTCTGGGAGCACGTCACATATAGAAGCACCGGAAAATGATAATAGGACAATTTCAGAAAGCATGCATAATAGAGATGATGGCCATGATGGAGAGGTTGCAAATTCAAATCAGAAAAATGAGGACAAGTCAAAAGTACATGCTCAAAATGAGGGTGGGTCAACCCTGCTATCTGCTGAGAAAGTCAAAGATGCTGCTAAAGCAGGCCTGTCTGCTGCAGCAATGAAAGCTAAATTGTTTGCTGATCATGAAGAGCGAGAAATTCAGAGGCTATCTGCTAATATTGTTAATAATAAGTTGAAAAGATTGGAACTGAAGCTGAAGCAGTTTGCAGAAATTGAAACACAGTTGATGAGAGAATGTGAACAAGTTGAGAAGGTGAGGCAGAGGTTTGCTTCTGAACGGTCCCATGTTGTATCAACCCGTCTTGGAAATGGTGGAACTGCTCCTCCAATGAATGTGGCAGGTGTTGGTCCATCCATGATTAACAACAATAGCAACGGTAGGCAACAAATGATTTCTGCTTCTTCCTCACAGCCTAGCATCTCAGGGTATGGCAACAGCCAACCAGTTCATCCACACATGTCCTTCGTCCCACGGCCTTCGATGTTCGGGTTGGGGCAAAGGTTGCCCCTTTCTATGATACAACAATCACAATCAGCTTCTTCAAATCCGATGTTCAACGGCCCCGGTAATGTGCATCCTACTCCCAATCATTCGATGTCGAGGCCGGTGTCAAGGACTAACTCTGGTTTAGGTTAA 2325 0.4714 MPPSPSFPSENRSKWRKKRRRESYKRNQKRHDEDDSDDDNNEPDSDDSDDQFRGPSSQFADPRVEIEVVSHDGVQISQFPPAIRRAVTRPHAAVAAIAALEAGDCRGQSQHGVPVLENVSHGQLQALSAVSADCLGGGSSFVVAPPPVLKGSGVVKRFGSRVLVVPMHSDWFSPTSVHRLERQAVPHFFSGKSPDHTPEKYMEFRNYIVARYMEDPGKRITVSSCQALSVGVGNEDLTRIVRFLDHWGIINYCAEGQSRENSDNETYLKEDTSGAICVPSAALRSIDSLVEFDKPKCKFKADEIYSSRTMRNTDISDLDDRIREHLSENHCHYCSRSLPVVYYQSQKEVDILLCTDCFHDGRFVTGHSSIDFIRVDSTTDYGDLDGDSWTDQETLLLLEAVEVYNENWNEIAEHVGTKSKAQCILHFLRLPVEDGKLENINVSSLSLSSNVKNQEDNGRLHCCSNGDSAGPVHNSQDSDGRLPFANSGNPVMALVAFLASSVGPRVAATCAHAALAALSGNNSGSTSHIEAPENDNRTISESMHNRDDGHDGEVANSNQKNEDKSKVHAQNEGGSTLLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLSANIVNNKLKRLELKLKQFAEIETQLMRECEQVEKVRQRFASERSHVVSTRLGNGGTAPPMNVAGVGPSMINNNSNGRQQMISASSSQPSISGYGNSQPVHPHMSFVPRPSMFGLGQRLPLSMIQQSQSASSNPMFNGPGNVHPTPNHSMSRPVSRTNSGLG 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01178 774 SUPERFAMILY Homeodomain-like 386 440 IPR009057 -
Pumo9g01178 774 MobiDBLite consensus disorder prediction 736 774 - -
Pumo9g01178 774 MobiDBLite consensus disorder prediction 534 569 - -
Pumo9g01178 774 Gene3D - 169 256 IPR036388 -
Pumo9g01178 774 MobiDBLite consensus disorder prediction 1 59 - -
Pumo9g01178 774 MobiDBLite consensus disorder prediction 521 578 - -
Pumo9g01178 774 Gene3D - 385 435 - -
Pumo9g01178 774 FunFam SWI/SNF complex subunit SMARCC2 isoform C 385 435 - -
Pumo9g01178 774 MobiDBLite consensus disorder prediction 461 483 - -
Pumo9g01178 774 CDD SANT 388 430 IPR001005 -
Pumo9g01178 774 ProSiteProfiles SWIRM domain profile. 163 261 IPR007526 GO:0005515
Pumo9g01178 774 ProSiteProfiles SANT domain profile. 384 435 IPR017884 -
Pumo9g01178 774 Pfam SWIRM domain 166 252 IPR007526 GO:0005515
Pumo9g01178 774 SMART sant 385 433 IPR001005 -
Pumo9g01178 774 SUPERFAMILY Homeodomain-like 162 256 IPR009057 -
Pumo9g01178 774 Pfam SWIRM-associated region 1 589 662 IPR032451 -
Pumo9g01178 774 ProSiteProfiles Zinc finger ZZ-type profile. 326 380 IPR000433 GO:0008270
Pumo9g01178 774 ProSiteProfiles Myb-like domain profile. 381 431 IPR001005 -
Pumo9g01178 774 FunFam SWI/SNF complex subunit SMARCC2 isoform c 169 258 - -
Pumo9g01178 774 Pfam Myb-like DNA-binding domain 388 430 IPR001005 -
Pumo9g01178 774 PANTHER SWI/SNF COMPLEX-RELATED 108 662 - -
Pumo9g01178 774 MobiDBLite consensus disorder prediction 468 483 - -
Pumo9g01178 774 Coils Coil 602 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01178 Pumo-Chr9 35355290 35361368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01178 331 427 EF-hand Containing Proteins AT3G07740 33.019 3.92e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01178 K11649 - gmx:100792929 1271.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01178 9 35355290 35361368 Pumo9g01178 9 35355290 35361368 ECH