Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00756 ATGTCATCAAAGCCAAGCATGTATGAACCAAAAAATATCCTCATTACTGGTGCAGCTGGTTTCATAGCCTCCCATGTGGCTACCAGGCTAATTGACAGGTACCCTAGCTACAAGATTGTAGCTCTTGATAAAGTAGACTATTGCTCCACTTTCAAGAATTTGCAGTCATGTGCTTCATCACCAAACTTCAAATTCATCAAAGGTGATATAGCTACTGCTGATATTGTGAATCACATTTTGATAGAAGAGGAAATAGATACCATTATGCATTTTGCTGCTCAAACACATGTGGACAATTCATTTGGAAACTCCATGGAATTCACCTACAACAATATCTATGGCACTCATGTGCTTCTTGAAGCCTGCAGGGTCACCAATTGTGTCAAAAGGTTCATTCATGTTAGCACAGATGAAGTCTATGGTGAAACAGACTTGGAGGCTGATATTGGAAATCATGAGGCATCTCAGCTTCTACCAACCAATCCTTATTCTGCAACAAAAGCAGGTGCTGAAATGTTGGTCATGGCTTATCATAGATCTTATGGTCTTCCAATTATAACTTCTAGAGGCAATAATGTTTATGGTCCCAACCAGTACCCAGAAAAGCTTGTTCCTAAATTCATTCTTCTTGCCATGAAGGGTGAGAAATTGCCAATCCATGGAGATGGATCCAATGTAAGGAGCTACCTCCACTGTGGGGATGTGGCAGAAGCTTTTGATGTCATACTTCACAAAGGAGAGATTGGCCAAGTTTACAACATTGGCACTAAGAAAGAAAGGAGTGTGTTAGATGTTGCAGAGGAAATCTGCAAGCAATTTAAATTGAATCCTAAAGATGTTATTGAGTTTGTTCAAGATAGGCCTTTCAATGACAAGAGATATTTCCTAGATGATCAAAAGCTCAAACAACTTGGTTGGGAGGAGAGAACTCCTTGGGAGGAAGGACTCAAGATGACAATTGATTGGTACAAAAAGAATCCTGATTGGTGGGGTGATGTATCCACTGCTTTAAACCCGCATCCGCGTTTTTCGGCTATCAATCTCTCTGATGAAGCTCAATGGTCCTTCCAATATGGATACTCAAGGCTTGCAAGGTCATATACTGAAGTTGGTAGAAAGAATTCAGGGTTGAAGTTTTTGATATATGGGAGGACAGGTTGGATAGGGGGGTTGTTGGGAAAGCTTTGTGATGAAGAGAGAATTGATTGGGAATATGGGAGAGGAAGATTGCAAGATAGGAAATCACTTATGGAGGATATAAGGAGGGTAAAGCCAACCCATGTCTTGAGTGCAGCTGGTGTTACAGGAAGGCCTAATGTTGATTGGTGTGAATCACACAAGGTTGAAACTATAAGGACTAATGTAGTGGGGACTTTAACACTGGCTGATGTGTGCAAGGAACATGGCTTATATATGATGAATTTTGCAACTGGTTGCATATTTGAGTATGATAAAGAGCATCCTCTAGGATCAGGCATTGGGTTCAAGGAAGAGGACAAGCCAAATTTCATTGGTTCCTTCTATTCAAAGACCAAGGCCATGGTGGAGGACCTTCTAAAAAATTATGAAAATGTCTGCACATTGAGAGTTAGAATGCCAATATCATCAAATCTTAGCAATCCAAGAAACTTCATCACAAAGATTTCTCGTTACAACAAGGTGGTAAACATACCTAATAGCATGACAGTGCTAGATGAGCTCTTACCCATATCCATTGAAATGGCCAAGAGGAACTTGAAAGGGATATGGAACTTCACCAACCCAGGAGTCATTAGCCACAATCAGATATTAGAATTGTATAGGGATTACATAGACCCACAATTTAAATGGGAGAATTTTGATTTGGAAGAACAAGCAAAAGTAATAGTTGCTCCCAGGAGTAACAATGAAATGGATGCTTCCAAGCTCAAAAACGAGTTCCCAGATTTGCTGTCCATCAGAGATTCCATTATCAAGTTTGTCTTTGAGCCTAACAAGAAAACTTGA 1986 0.4013 MSSKPSMYEPKNILITGAAGFIASHVATRLIDRYPSYKIVALDKVDYCSTFKNLQSCASSPNFKFIKGDIATADIVNHILIEEEIDTIMHFAAQTHVDNSFGNSMEFTYNNIYGTHVLLEACRVTNCVKRFIHVSTDEVYGETDLEADIGNHEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPIITSRGNNVYGPNQYPEKLVPKFILLAMKGEKLPIHGDGSNVRSYLHCGDVAEAFDVILHKGEIGQVYNIGTKKERSVLDVAEEICKQFKLNPKDVIEFVQDRPFNDKRYFLDDQKLKQLGWEERTPWEEGLKMTIDWYKKNPDWWGDVSTALNPHPRFSAINLSDEAQWSFQYGYSRLARSYTEVGRKNSGLKFLIYGRTGWIGGLLGKLCDEERIDWEYGRGRLQDRKSLMEDIRRVKPTHVLSAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCKEHGLYMMNFATGCIFEYDKEHPLGSGIGFKEEDKPNFIGSFYSKTKAMVEDLLKNYENVCTLRVRMPISSNLSNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVISHNQILELYRDYIDPQFKWENFDLEEQAKVIVAPRSNNEMDASKLKNEFPDLLSIRDSIIKFVFEPNKKT 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00756 661 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 7 342 - -
Pumo9g00756 661 Pfam GDP-mannose 4,6 dehydratase 14 319 IPR016040 -
Pumo9g00756 661 Pfam NAD dependent epimerase/dehydratase family 407 547 IPR001509 -
Pumo9g00756 661 CDD dTDP_GD_SDR_e 11 328 IPR005888 GO:0008460|GO:0009225
Pumo9g00756 661 FunFam UDP-glucose 4,6-dehydratase 13 215 - -
Pumo9g00756 661 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 368 661 - -
Pumo9g00756 661 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 375 653 IPR036291 -
Pumo9g00756 661 Gene3D - 368 661 - -
Pumo9g00756 661 CDD dTDP_HR_like_SDR_e 378 650 - -
Pumo9g00756 661 Gene3D - 204 326 - -
Pumo9g00756 661 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 334 IPR036291 -
Pumo9g00756 661 Gene3D - 13 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00756 Pumo-Chr9 14679852 14682261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00756 12 323 Miscellaneous Gene Families AT1G02000 25.075 7.71e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00756 K12450 - gmx:100776241 1318.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00756 9 14679852 14682261 Pumo9g00756 9 14679852 14682261 ECH