Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00748 ATGCACATAAAGGGATTAGGTGAGGCACGAAGAGTCGATGAGGCTTTTGAATTGCTTGAAACTGTGGAAAATGGCACTGCCACGGGAAGTCCAAACTTGTCTGCTCCATTGATCTTTGGTCTGCTAAATGCCTTAATCAAAACAGGAGACTTGCGTCGTGCAAATGGTCTCCTTGCCCGTTATGGTTTTGTGCTTCGTGAAGGTGGCAATTTTTCAGTCTCAGTATACAACATACTAATGAAGGGCTACATAAACTCAGGTTGTCCACACACTGCCATAAACATGCTCAATGAAATTTTACGTCAAGGCATAATGCCTGACAGGCTCACGTATAACACACTAATTTTAGCATGCGTCGAGAGTGGAAAGTTGGATGTTGCAATGCAATTTTTTGAGGAAATGAAGGTTAAAGCACAGAAGTTTGTCAATGTTGATCTGTTTCCAGATATTGTTACATATACAACAATCCTTAAGGGTTTTGGGCAGGCGAAGGATCTTGCTTCAGTTCTGAAAATAGTGCTGGAAATGAAATCTCGTCATGAATTATACATTGATAGAACTGCTTACACTGCAATAATTGATGCTTTTCTAAAATGTGGCTCAGTTAAGGGTGCTCTGTGTATTTTTGGAGAAATGTTGAAGCAGGCTGGTCTGAATCCAGAGTTGAGGCCAAAGCCTCACCTCTATCTTTCCATGATGCGTGCGTTTGCTTTTCTAGGAGATTATGATCTAGTTAAAAAATTGCATAAACGGATTTGGCCAGATTCAGCAGGAACCATATTATTAGTTGCTCAAGAAGAAGCTGATCACCTTCTCATGGAAGCAGCACTGAATGCTGGCCAGGTTAATGTTGCCATTAAAACTCTTACTGAGATTGTTTCAAGATGGAAGGGCATATCCTGGACAAGTCGTGGGGGCATGGTTGCTTATCGTATTGAAGCCATGTTGGGATTCTCTAAGTCATTATTCAGTCCTCACTTACTTCCTCAGGTTTCACCTTCTGAGCCGGTTGAGAATTATATGATACAATTTGAAGCAACACGGCCACTACAAGGTACCATAAAGCTGAGGAGAGTGGTTATGCGTTTCTTTGATGAAGCAGTTGTTCCTATTGTAGATGAGTGGGGGAGTTGTACAGGGCTGTTACACCGTGAAGACTGCAACCAGTTGGATGCTCCACTTTCAACAATGATGAGAAGCCCTCCTCCCATTGTTACGACTTCAACATCTGTTGGTCATGTAGTTGATTTAATTTTAGAGAAGCGATACCCAATGGTTATTGTTGTAAATTACACAAATTCATATGCTGATACTCCATACAGCTCTAGAGCAGTTGGAGTTTTTACATCAGAACAATTGAGTAGGTTTATCACACCTGTATCTCAAGTAAAAGGGACAGATCTTTCAGTCTACAAAAGGTAA 1422 0.4114 MHIKGLGEARRVDEAFELLETVENGTATGSPNLSAPLIFGLLNALIKTGDLRRANGLLARYGFVLREGGNFSVSVYNILMKGYINSGCPHTAINMLNEILRQGIMPDRLTYNTLILACVESGKLDVAMQFFEEMKVKAQKFVNVDLFPDIVTYTTILKGFGQAKDLASVLKIVLEMKSRHELYIDRTAYTAIIDAFLKCGSVKGALCIFGEMLKQAGLNPELRPKPHLYLSMMRAFAFLGDYDLVKKLHKRIWPDSAGTILLVAQEEADHLLMEAALNAGQVNVAIKTLTEIVSRWKGISWTSRGGMVAYRIEAMLGFSKSLFSPHLLPQVSPSEPVENYMIQFEATRPLQGTIKLRRVVMRFFDEAVVPIVDEWGSCTGLLHREDCNQLDAPLSTMMRSPPPIVTTSTSVGHVVDLILEKRYPMVIVVNYTNSYADTPYSSRAVGVFTSEQLSRFITPVSQVKGTDLSVYKR 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00748 473 Pfam PPR repeat family 73 118 IPR002885 -
Pumo9g00748 473 ProSiteProfiles CBS domain profile. 397 468 IPR000644 -
Pumo9g00748 473 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 107 141 IPR002885 -
Pumo9g00748 473 Gene3D Tetratricopeptide repeat domain 142 316 IPR011990 GO:0005515
Pumo9g00748 473 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 72 106 IPR002885 -
Pumo9g00748 473 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 220 IPR002885 -
Pumo9g00748 473 Gene3D Tetratricopeptide repeat domain 2 141 IPR011990 GO:0005515
Pumo9g00748 473 SUPERFAMILY CBS-domain pair 337 433 IPR046342 -
Pumo9g00748 473 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 179 IPR002885 -
Pumo9g00748 473 NCBIfam pentatricopeptide repeat 151 179 IPR002885 -
Pumo9g00748 473 NCBIfam pentatricopeptide repeat 75 107 IPR002885 -
Pumo9g00748 473 NCBIfam pentatricopeptide repeat 188 220 IPR002885 -
Pumo9g00748 473 NCBIfam pentatricopeptide repeat 110 135 IPR002885 -
Pumo9g00748 473 Pfam PPR repeat 188 214 IPR002885 -
Pumo9g00748 473 Pfam Pentatricopeptide repeat domain 140 179 IPR002885 -
Pumo9g00748 473 PANTHER OS09G0431600 PROTEIN 3 469 IPR044781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00748 Pumo-Chr9 14543607 14558758 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00748 96 343 Glycosyltransferase AT1G05670 26.690 5.15e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00748 - - gmx:100813146 870.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00748 9 14543607 14558758 Pumo9g00748 9 14543607 14558758 ECH