Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00716 ATGCCTCCATCCAGAGGTCGTGGTGGTGGTGGTGGTGGAGGGTTCAGGGGTGGTAGAGGTGACAGAGGAAGAGGAAGGGGTGGTGGAGGAAGAGGAGGAGATAGGGGTATGTCGTTCAAAGCTAGAGGCGGTGGCCGTGGAGGAGGCAGGGGAGGTGGCCGTGGAGGAGGCAGAGGTGGTGGCCGTGGTGGAATGAAGGGAGGGAGCAAGGTTGTGGTTCAGCCTCACAGACATGAGGGTATTTTCATTGCCAAGGGTAAAGAAGATGCTCTTGTCACTAAGAATCTTGTTCCTGGTGAAGCTGTCTACAATGAGAAAAGGATTACTGTTCAGAACGAGGATGGTTCCAAAGATGAGTACAGGGTTTGGAATCCTTTCCGCTCAAAGTTGGCTGCTGCCATCCTTGGTGGAGTTGACAACATATGGATTAAACCTGGAGCCAGAGTCCTTTACTTAGGAGCTGCTTCTGGGACAACCGTTTCTCATGTTTCTGACGTTGTTGGCCCGACAGGAGTTGTCTATGCAGTAGAATTCTCTCACAGAAGTGGACGTGACTTGGTCAATATGGCAAAGAAGCGCACTAATGTCATACCCATTATTGAAGATGCTAGACATCCAGCTAAGTACAGGATGTTGGTTGGAATTGGTTGA 651 0.5054 MPPSRGRGGGGGGGFRGGRGDRGRGRGGGGRGGDRGMSFKARGGGRGGGRGGGRGGGRGGGRGGMKGGSKVVVQPHRHEGIFIAKGKEDALVTKNLVPGEAVYNEKRITVQNEDGSKDEYRVWNPFRSKLAAAILGGVDNIWIKPGARVLYLGAASGTTVSHVSDVVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGIG 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00716 216 MobiDBLite consensus disorder prediction 1 69 - -
Pumo9g00716 216 ProSitePatterns Fibrillarin signature. 171 185 IPR020813 GO:0003723|GO:0006364|GO:0008168
Pumo9g00716 216 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 7 214 - -
Pumo9g00716 216 SMART Fibrillarin_2 73 216 IPR000692 GO:0003723|GO:0006364|GO:0008168
Pumo9g00716 216 FunFam Fibrillarin like 1 68 123 - -
Pumo9g00716 216 Pfam Fibrillarin 73 214 IPR000692 GO:0003723|GO:0006364|GO:0008168
Pumo9g00716 216 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 71 212 IPR029063 -
Pumo9g00716 216 FunFam Mediator of RNA polymerase II transcription subunit 36a 124 175 - -
Pumo9g00716 216 PRINTS Fibrillarin signature 196 216 IPR000692 GO:0003723|GO:0006364|GO:0008168
Pumo9g00716 216 PRINTS Fibrillarin signature 91 110 IPR000692 GO:0003723|GO:0006364|GO:0008168
Pumo9g00716 216 PRINTS Fibrillarin signature 119 138 IPR000692 GO:0003723|GO:0006364|GO:0008168
Pumo9g00716 216 PRINTS Fibrillarin signature 146 167 IPR000692 GO:0003723|GO:0006364|GO:0008168
Pumo9g00716 216 PRINTS Fibrillarin signature 171 188 IPR000692 GO:0003723|GO:0006364|GO:0008168
Pumo9g00716 216 Gene3D Phosphorylase Kinase; domain 1 68 123 - -
Pumo9g00716 216 Gene3D Vaccinia Virus protein VP39 124 215 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00716 Pumo-Chr9 13999478 14000677 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00716 K14563 - gmx:100789137 311.997