Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00678 ATGCGCTCTCGCTTTCTCAAACCTCGTCACATACTCTCCTCCCTCCGTTCATTACCCTTTAACCCAAACCCGAACCTCATCCCTTCAATCCGAACCTCCCCGCACCGTCCCTTCTCTTCTTCATGGCTATCCGAACCTGGAAACCCAATCATCCAATGGCCCTCACTACCCCCAAACCCAATCACCCAACCCACACCGAGCCTCGCTCCGAACCCCACGCCCGACCAAGCTTCCTCGAACTCAAACGCTCTCTCCGTGATTTCCAACCTCTTCGCCGACCCTTCCGTCCCGCCCGGCCCGGCCCTCCACGCCGAGCTCGACCGGGCCGGGATCGAGGCGGGCCCGGCCCTCCTGCTCGCCGTGTTCGACCGCTTCGGCTCGTCGCTCAGGCTGCTCCACTCGCTCTTCCTCTGGGCCCAGGCCCGGCCCGGCTTCAGGCCCGGCCCGAAGCTCTTTGACGCCATGGTCAACGCGCTCGCGAAGGCGAGGGAGTTCGACGCCGCGTGGAAGCTCGTTCTCGATTACATCGAGGGAGACGGGGAAGGAGAAGAAAAAGAAAGGTTGGTCTCCGTTGGGACCTTCGCTATCATGATTCGGCGCTACGCGCGTGCAGGTATGTCCAAACTTGCAATTAGAACATATGAGTTTGCTAGAAATAACAAGTCAATTGTGGATTCTGGCTCAGAAATGAGTTTATTTGAGATATTGATGGATTCACTTTGTAAAGAAGGATCAGTGAGGGAAGCTTCAGAGTATTTCCTTTGGAAAAAGGAGTTGGACTTAAGTTGGGTTCCTTCTATTCGTGTTTACAACATAATGTTAAATGGATGGTTTAGATCGAGGAAACTCAAGCAGGGCGAGAGACTTTGGGAAGAGATGAAGAAGAAGAATGTGAGACCAAGTGTTGTGACATATGGTACCCTTGTGGAAGGATATTGTCGGATGCGCCGTGTCGAAAAGGCACTTGAAATGGTTGGTGATATGACCAAAGAAGGAATTGCACCAAATGCAATTGTGTACAACCCAATAATTGATGCACTGGCAGAAGCTGGAAGATTCAAAGAGGCTTTGGGTATGTTGGAACGTTTTCATGTTTTGGAAATAGGCCCTACTGATTCAACATACAATTCTCTGGTAAAGGGGTTTTGTAAGGCAGGAGATCTTGTAGGTGCTAGTAAGATTCTTAAAATGATGATAAGTAGGGGCTTCCTCCCAAGTCCCACCACCTATAACTACTTTTTTAGGTACTTTTCAAGATGTGGAAAAATTGAGGAGGGGATGAACCTGTATACAAAGATGATTGAATCTGGTTATACCCCGGATCGGTTAACTTACCATCTTCTGCTGAAGATGTTATGTGAAGAGGGGAAGTTAGACTTGGCAGTTCAAGTTAGCAAGGAAATGAGGCATAATGGATACGACATGGACTTGGCTACGAGTACCATGTTAATTCACTTGCTTTGCAAAATGCGTAGGTTGGAAGAGGCTTTTGCGGAATTTGAGGACATGATACGAAGGGGTATAGTTCCTCAGTATCTCACTTTCCAGAGAATGAAAGCTGAGTTAAAGAAACAAGGTATGACTGAAATGGCTAAAAAACTTTGCAAGTTGATGTCTTCTGTTCCCTATTCTACCAACATGCCAAATACTTATGGCGAAGTCAGAGAAGATGCTCATGCACGAAGAAAATCTATAATTCGGAAAGCTAAAGCATTTTCTGATATGCTGAAGGACTGTAAGGACCCTGATGAACTCCGTAAGTATAGAAGTTCATCAGAAGATGCCCTCTCAAGCACAAACAATTTGATAGAGGATATTGAGAGAAAAAGAAATACAGGATGA 1842 0.4739 MRSRFLKPRHILSSLRSLPFNPNPNLIPSIRTSPHRPFSSSWLSEPGNPIIQWPSLPPNPITQPTPSLAPNPTPDQASSNSNALSVISNLFADPSVPPGPALHAELDRAGIEAGPALLLAVFDRFGSSLRLLHSLFLWAQARPGFRPGPKLFDAMVNALAKAREFDAAWKLVLDYIEGDGEGEEKERLVSVGTFAIMIRRYARAGMSKLAIRTYEFARNNKSIVDSGSEMSLFEILMDSLCKEGSVREASEYFLWKKELDLSWVPSIRVYNIMLNGWFRSRKLKQGERLWEEMKKKNVRPSVVTYGTLVEGYCRMRRVEKALEMVGDMTKEGIAPNAIVYNPIIDALAEAGRFKEALGMLERFHVLEIGPTDSTYNSLVKGFCKAGDLVGASKILKMMISRGFLPSPTTYNYFFRYFSRCGKIEEGMNLYTKMIESGYTPDRLTYHLLLKMLCEEGKLDLAVQVSKEMRHNGYDMDLATSTMLIHLLCKMRRLEEAFAEFEDMIRRGIVPQYLTFQRMKAELKKQGMTEMAKKLCKLMSSVPYSTNMPNTYGEVREDAHARRKSIIRKAKAFSDMLKDCKDPDELRKYRSSSEDALSSTNNLIEDIERKRNTG 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00678 613 Pfam PPR repeat 437 469 IPR002885 -
Pumo9g00678 613 Pfam PPR repeat family 265 314 IPR002885 -
Pumo9g00678 613 Pfam PPR repeat family 373 415 IPR002885 -
Pumo9g00678 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Pumo9g00678 613 MobiDBLite consensus disorder prediction 53 71 - -
Pumo9g00678 613 MobiDBLite consensus disorder prediction 587 613 - -
Pumo9g00678 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 475 IPR002885 -
Pumo9g00678 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Pumo9g00678 613 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 64 456 - -
Pumo9g00678 613 SUPERFAMILY HCP-like 265 473 - -
Pumo9g00678 613 NCBIfam pentatricopeptide repeat 303 337 IPR002885 -
Pumo9g00678 613 NCBIfam pentatricopeptide repeat 338 371 IPR002885 -
Pumo9g00678 613 NCBIfam pentatricopeptide repeat 409 441 IPR002885 -
Pumo9g00678 613 NCBIfam pentatricopeptide repeat 481 510 IPR002885 -
Pumo9g00678 613 NCBIfam pentatricopeptide repeat 444 476 IPR002885 -
Pumo9g00678 613 NCBIfam pentatricopeptide repeat 269 301 IPR002885 -
Pumo9g00678 613 NCBIfam pentatricopeptide repeat 374 406 IPR002885 -
Pumo9g00678 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Pumo9g00678 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 510 IPR002885 -
Pumo9g00678 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Pumo9g00678 613 Pfam PPR repeat 339 362 IPR002885 -
Pumo9g00678 613 Pfam PPR repeat 479 508 IPR002885 -
Pumo9g00678 613 Pfam PPR repeat 235 253 IPR002885 -
Pumo9g00678 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Pumo9g00678 613 MobiDBLite consensus disorder prediction 53 80 - -
Pumo9g00678 613 Gene3D Tetratricopeptide repeat domain 115 255 IPR011990 GO:0005515
Pumo9g00678 613 Gene3D Tetratricopeptide repeat domain 330 397 IPR011990 GO:0005515
Pumo9g00678 613 Gene3D Tetratricopeptide repeat domain 469 541 IPR011990 GO:0005515
Pumo9g00678 613 Gene3D Tetratricopeptide repeat domain 398 468 IPR011990 GO:0005515
Pumo9g00678 613 Gene3D Tetratricopeptide repeat domain 256 329 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00678 144 563 Miscellaneous Gene Families AT4G11690 25.328 1.22e-43 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00678 - - gmx:100793484 1081.24