Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00642 ATGCAATTAACAAAGCTATCATCATCTGCTGCAACCGCACTCACCACCACCTCACTGTTCCAAGTCCAACTCCCTCCACACACCACAAAACGACGCGTCGCAGAGCAAACCTGCTTGGCCCTCCTCAACACCTGCGACGCGCTCACCACCCTCACACAAATCCACGCGCTCATCCTCAAGCTCGGTCTCCAACACAACCCTCTCGTCCTCACCAAGTTCGCCGCCACCTCCTCCCTCTTCAACGCCGTTCACTACGCCTCCTGCGTCGTTTTCCCCAATAATGACGAAACTGCCCCTCCCCCTCTCCCCTTCCACGACACCTTCCTCTTCAACACCCTCATCAGGGCCTTCGCCCAAACGACACACTCCAAGCCCGACGCCCTGCGTTTCTACCGAACCATGCTCCGACACGCCGTTTTGCCCAACAAGTTCACCTTCCCGTTCGTGCTCAAGGCATGCGCCGGAATCGCGAGTTTGAAGCTGGGGAAGACGGTGCATGCCTCGGTGGTGAAGTTTGGCTTCGAAGAGGATCCTCACGTGCGGAACACTATGGTTCATATGTATTGTTGCTGCGAGGATGGGTCTGAGCCTGAATCTGCTAAGAAGGTGTTTGATGAAAGTCCTGAGAAGGATTCGGTCACGTGGAGCGCCATGATTGGAGGGTACGCACGTGCGGGGAATTCTGCACGTGCGGTTACGTTGTTTAGAGAGATGCAGGTTTCAGGGGTGTGTCCTGACGAGGTCACCATGGTTTCGGTTTTGTCTGCATGTGCTGATTTGGGTGGCTTGAGTTTGGGAAGTGGTTGGAGTCTTATGTTGAGAGGAAGAACTAACGAAGGAATGAAAGTGAGGACCATTGTTTCGTGGACTTCAGTGATTGTTGGTTTGGCGATGCACCGTCGCGGATTGGGGTGTTTGCTGTTTGATGAGATGGTGGAACAAGGGGTGGAGCCTGATGATGTTGCTTTCATTGGGGTGCTTTCTGCGTGTAGTCACGCGGCTAGTTGA 1008 0.5417 MQLTKLSSSAATALTTTSLFQVQLPPHTTKRRVAEQTCLALLNTCDALTTLTQIHALILKLGLQHNPLVLTKFAATSSLFNAVHYASCVVFPNNDETAPPPLPFHDTFLFNTLIRAFAQTTHSKPDALRFYRTMLRHAVLPNKFTFPFVLKACAGIASLKLGKTVHASVVKFGFEEDPHVRNTMVHMYCCCEDGSEPESAKKVFDESPEKDSVTWSAMIGGYARAGNSARAVTLFREMQVSGVCPDEVTMVSVLSACADLGGLSLGSGWSLMLRGRTNEGMKVRTIVSWTSVIVGLAMHRRGLGCLLFDEMVEQGVEPDDVAFIGVLSACSHAAS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00642 335 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 141 IPR002885 -
Pumo9g00642 335 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 279 333 IPR046960 GO:0003723|GO:0009451
Pumo9g00642 335 Pfam PPR repeat family 210 258 IPR002885 -
Pumo9g00642 335 FunFam Pentatricopeptide repeat-containing protein chloroplastic 118 272 - -
Pumo9g00642 335 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Pumo9g00642 335 NCBIfam pentatricopeptide repeat 213 247 IPR002885 -
Pumo9g00642 335 Gene3D Tetratricopeptide repeat domain 159 264 IPR011990 GO:0005515
Pumo9g00642 335 Gene3D Tetratricopeptide repeat domain 101 158 IPR011990 GO:0005515
Pumo9g00642 335 Gene3D Tetratricopeptide repeat domain 272 335 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00642 Pumo-Chr9 11877853 11879589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00642 40 334 Glycoside Hydrolase AT3G49170 24.316 2.17e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00642 - - gmx:100778415 473.396