Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00585 ATGCATTCACAACCTCTTATGATAAACATGGTCCTCCAAAGACTCATCATCATCACACCCCTTTTGGTTCTATTCATGAGTACCCATTATTCTCATGCTAGTGTTGAGTCTTCTAATTTGAAATATGCACCAAAATTTGGAAGTGTTAGAGCTGCTTATTGGCCTTCGGGTGATGACCTTTCACCTTCTTCCATTGACACCAAATACTTCACTCACATCTATTATGCTTTTATCCAACAAGACCCTCAACTTTTTCAGCTTAGTGTCACCGAATTTGACAAAAAATGGATACCACAATTCATCAACGGGCTCCGCTACCGTTACCCGCCTGTGAAAACTCTCTTGTCAATCGGAGGAGGTGGGAGCAACTCAACCGCGTTTTCCCTCATGGCTAGCAACAAGCACACCCGAGAAGTGTTCATAAACTCCACCATCCACGTGGCGCGCCAATACGGCTTCAACGGTCTCGATTTAGATTGGGAGTTCCCAGAAGACGAAGCTGACATGTCCAACCTCGGTTTCTTGTTTCAAGAGTGGCACCAGGCTTTGGTGGTGGAAGCAAAAACTAGTAGAAAACCGCGGCTGCTCTTGACGGCCGCGGTCTATTATGCTTCCACCATCAAGCTTATCGGCAATGGGCCGAGGTCGTATCCGGCCCAAGCCATTTGGAACTACTTGGATTGGGCCAGCCCAATGTGCTTTGACTACCATGGGACCTGGGCCAATTTTACGGGCTTTAATGCTGCATTGTATGATCCGAAGTCCAATATAAGTACCCGGTACGGGATCGGGTCTTGGATCGAATCCGGCGTGCCCGCCCAAAAGTTGGTTATGGGTTTACCGTTATACGGTCGGGCATGGGCGCTCCGAGACCCGAATGTTCATGGGGTTGGGGCAGAAGCGGTTGGGGAAGCCACTGATACGGATGGTACTTTGGACTATGATCAAATTTTGGTGTTTAACCAAGAGAATGGTGCCACTGTTGTGTATGATGATGTAGCTGTGGCTTTCTACTCTTATGCGGGTACAACTTGGATCGGGTACGATGATGGACCATCCATAAAGAAGAAGGTTCAGTTTGCAAGGTTTACGGGCTTGAAGGGCTATTTCTTTTGGGCCGTTGGGAAGGATAAGGATTGGACCATCTCAAGACAAGCTTCAAATGCATGGGAACGCTGA 1179 0.4784 MHSQPLMINMVLQRLIIITPLLVLFMSTHYSHASVESSNLKYAPKFGSVRAAYWPSGDDLSPSSIDTKYFTHIYYAFIQQDPQLFQLSVTEFDKKWIPQFINGLRYRYPPVKTLLSIGGGGSNSTAFSLMASNKHTREVFINSTIHVARQYGFNGLDLDWEFPEDEADMSNLGFLFQEWHQALVVEAKTSRKPRLLLTAAVYYASTIKLIGNGPRSYPAQAIWNYLDWASPMCFDYHGTWANFTGFNAALYDPKSNISTRYGIGSWIESGVPAQKLVMGLPLYGRAWALRDPNVHGVGAEAVGEATDTDGTLDYDQILVFNQENGATVVYDDVAVAFYSYAGTTWIGYDDGPSIKKKVQFARFTGLKGYFFWAVGKDKDWTISRQASNAWER 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00585 392 PANTHER CHITINASE 52 390 - -
Pumo9g00585 392 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 153 161 IPR001579 GO:0004553|GO:0005975
Pumo9g00585 392 Gene3D - 282 348 IPR029070 -
Pumo9g00585 392 SUPERFAMILY Chitinase insertion domain 283 348 IPR029070 -
Pumo9g00585 392 SMART 2g34 48 377 IPR011583 GO:0008061
Pumo9g00585 392 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 48 392 IPR001223 GO:0005975
Pumo9g00585 392 Pfam Glycosyl hydrolases family 18 52 377 IPR001223 GO:0005975
Pumo9g00585 392 SUPERFAMILY (Trans)glycosidases 51 379 IPR017853 -
Pumo9g00585 392 Gene3D Glycosidases 63 378 - -
Pumo9g00585 392 CDD GH18_plant_chitinase_class_V 49 383 - -
Pumo9g00585 392 FunFam Class V chitinase CHIT5b 282 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00585 Pumo-Chr9 9802124 9804319 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00585 49 391 Glycoside Hydrolase AT4G19810 45.217 1.64e-99 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00585 K01183 - gmx:100787511 725.702