Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00536 ATGCTTGTTGCGGTTGGAGCATCGTGGGATCTGAATTGGTTCCTGCAATTGCTGCTCTCCGTGATCGTAGTGGCCGTTGGGGTTCACTATTTCGTGAAGGCCACCGCTTCAAAGTACTTCTTGGTCGACGCCAATTTCGAAGGGGACCACCACGCCCTCGCCGACGCAATGCCCGGCGCCCTCGCCGCCGCCGATCCTCTCTGCGCCGTCTGCGCCACGCCCGCCTCCAAGAAGTGCTCGCGCTGCAAAGCCGTCAGATATTGCTCGCAAGAATGCCAGCAGTCGCATTGGAAGTCTGGGCATAAGACAGTATGCAAGGATTTTCATGAGTCCAGTGTGAGAAGCTCGTTGCAGAATGGGGTAATTAATCGTGGTGGGTTTAAGGCTTCTGCTGCTGGGGGTAAAAGCTCGCCATCGGTTGCCCTGATACCTGGTGTTGGAGCAATTTCCCGGCCAATCAAGCAGGCTAAAGATGTTCTTTTTCCTTATGATGAATTTGTCAAGTTTTTTAAGTGGGACAAGCCAGGATTTCCTCCTTGTGGACTCTTGAATTGTGGAAACAGTTGCTTTGCAAATGTGGTTCTTCAATGCCTCTCATTCACAAGGCCACTTGTTGCCTACTTGTTGGAGAAGGGCCACCGCAGAGAATGTAATTGCAGTTGTAATGATTGGTGTTTTCTATGTGAATTTGAAAATCATGTTGATAGAACAAGGAAAAGTTCACAGGCATTTTCTCCTATGAATATTCTGTCTCGTTTGCCTAATATTGGTGGTACACTGGGCTATGGAAGACAAGAGGATGCTCATGAGTTCATGAGGTTTTCCATTGATACTATGCAATCTGTTTGCCTTGATGAATTTGGTGGAGAAAAAGCTGTCCCTCCTAACCTTCAGGAGACTACCCTTATTCAACACATTTTTGGTGGCCGTCTTCAATCTGAGGTGATTTGCACAAAATGTGATAAGATTTCAAATCAGTATGAAAATATGATGGACTTGACAGTTGAAATTCATGGAGATGCTGCCTCCTTGGAGGAATGTCTAGACCAGTTTACTGCCAGGGAGCGGCTTGATGGGGAAAATATGTATAAATGTGAGGGGTGCAAGGATTATGTCAAGGCATGGAAACGCCTTACTGTGAAATGCGCTCCAAATATTCTTACAATTGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGAAAACTTAACAAGAGAATAGCCTTCCCTGAGACTTTAAATCTTAGCCCTTATATGAGTGAAGCTGGAGATGGATCTGATATTTATAAGCTATATGGTGTTGTAGTACATATTGATATGCTAAATGCTTCATTTTTTGGTCATTACATATGCTACATCAAGGATTTCCAGGGAAACTGGTATAGGATTGATGACTGGAAGGTTATGACTGTGGAGTTGGAAGAGGTACTTTCTCAGGGAGCATACATGCTCTTGTATAGCAGGTGTAGTGCTCGGCCATCAGGCCTTCAAATTCAAACTAGCGAATCTTCAGGGTTAGCAGAAGTTCAAACAACGGAAGTGGAAGTGGAGCCTAGTGCTCGTCCATCAGGCCTTCAAATTCAAACTAGTGAATCTTCAGGGATAGCAGAAGTTCAAACAACGGAAGTGGAAGTGGAGCCTGGACAAACTGAACGAGATAAATGCCTCTCAAATATTAAGACTTTGACTTATAATAGAGGTTCTGAAGTTCAAACAACAGAAGTGGAAGTGGAAGTGGAGGCTGGACAAACTGAACGAGATGAATGCCTCTCTAATATGAAGACTTTGACTTATAGTAGAGGTTCTGAAGTTCAAACAACGGAAGCAGAAGTGCCTGGACAAACTGAACGAGATGAATGCCTCTCAAATATGAAGACTTTGACTTATAGTAGAGGTTCTGAAGTTCAAACAACGGAAGCAGAAGTGCCTGGACAAACTGAACGAGATGAATGCCTCTCAAATATGAAGACTTTGATTTATAGTAGAGGTTCTGAAGTTCAAACAACGGAAGTGGAAGTGGAAGTGGAAGCTGGACAAACTGAACGAGATGAATGCCTCTCAAATATGAAGACTTTGACTTATAGTAGAGGTTCTGAGGTTTTGCCATCTGATGTTAGTCCAGAATCAAAAGTTTCTTCCAGCTATGACTGCGAGTCTTCTGCTGGATTGAACTCACAAGCCAAAAGAGAACAGTCTGCGGATATGGACATGATGGATGTTGATTCAACTGACATTGCAAATGAGTATGTGCCTATTTCTCAAACTGTCAGTGATTTGGGGGATGTAGATATGGGCAGATCTATAGAAGAGACTTCAGGCTGTAAGGAAGAGCAAGATGATACTGATATGGTTAGGTCTGGTCCTTGTCCGGTTTCACGGGATCATCAAAATGTGGAAGAAGATTCGGAACATACAGATGTGGTTAACTGCAAGTTGATTACAGCTAAAGATAATGCATACTATGGTAATGGATATGTCAGTGAAAACAAGTCTTCAATTCCAGTTGAAGATGCTGGCACACAAATTTCTGGCATCGGTTCTTTTCCCACTGAAAATGACAAAGGAAATGGAATCAAGAAAGTGGAAATATCAGCTGACATCTAG 2601 0.4348 MLVAVGASWDLNWFLQLLLSVIVVAVGVHYFVKATASKYFLVDANFEGDHHALADAMPGALAAADPLCAVCATPASKKCSRCKAVRYCSQECQQSHWKSGHKTVCKDFHESSVRSSLQNGVINRGGFKASAAGGKSSPSVALIPGVGAISRPIKQAKDVLFPYDEFVKFFKWDKPGFPPCGLLNCGNSCFANVVLQCLSFTRPLVAYLLEKGHRRECNCSCNDWCFLCEFENHVDRTRKSSQAFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFSIDTMQSVCLDEFGGEKAVPPNLQETTLIQHIFGGRLQSEVICTKCDKISNQYENMMDLTVEIHGDAASLEECLDQFTARERLDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRIAFPETLNLSPYMSEAGDGSDIYKLYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVELEEVLSQGAYMLLYSRCSARPSGLQIQTSESSGLAEVQTTEVEVEPSARPSGLQIQTSESSGIAEVQTTEVEVEPGQTERDKCLSNIKTLTYNRGSEVQTTEVEVEVEAGQTERDECLSNMKTLTYSRGSEVQTTEAEVPGQTERDECLSNMKTLTYSRGSEVQTTEAEVPGQTERDECLSNMKTLIYSRGSEVQTTEVEVEVEAGQTERDECLSNMKTLTYSRGSEVLPSDVSPESKVSSSYDCESSAGLNSQAKREQSADMDMMDVDSTDIANEYVPISQTVSDLGDVDMGRSIEETSGCKEEQDDTDMVRSGPCPVSRDHQNVEEDSEHTDVVNCKLITAKDNAYYGNGYVSENKSSIPVEDAGTQISGIGSFPTENDKGNGIKKVEISADI 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00536 866 MobiDBLite consensus disorder prediction 842 866 - -
Pumo9g00536 866 MobiDBLite consensus disorder prediction 697 733 - -
Pumo9g00536 866 MobiDBLite consensus disorder prediction 521 538 - -
Pumo9g00536 866 SUPERFAMILY HIT/MYND zinc finger-like 65 108 - -
Pumo9g00536 866 ProSiteProfiles Zinc finger MYND-type profile. 68 105 IPR002893 -
Pumo9g00536 866 FunFam Ubiquitin carboxyl-terminal hydrolase 15 174 496 - -
Pumo9g00536 866 MobiDBLite consensus disorder prediction 697 730 - -
Pumo9g00536 866 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 181 196 IPR018200 GO:0004843|GO:0006511
Pumo9g00536 866 Gene3D Cysteine proteinases 176 496 - -
Pumo9g00536 866 CDD Peptidase_C19E 179 486 - -
Pumo9g00536 866 MobiDBLite consensus disorder prediction 501 538 - -
Pumo9g00536 866 ProSitePatterns Zinc finger MYND-type signature. 68 105 IPR002893 -
Pumo9g00536 866 Pfam Ubiquitin carboxyl-terminal hydrolase 180 485 IPR001394 GO:0004843|GO:0016579
Pumo9g00536 866 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 180 488 IPR028889 -
Pumo9g00536 866 FunFam Ubiquitin carboxyl-terminal hydrolase 15 60 109 - -
Pumo9g00536 866 Gene3D - 60 110 - -
Pumo9g00536 866 SUPERFAMILY Cysteine proteinases 176 490 IPR038765 -
Pumo9g00536 866 MobiDBLite consensus disorder prediction 770 802 - -
Pumo9g00536 866 Pfam MYND finger 68 105 IPR002893 -
Pumo9g00536 866 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 95 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00536 Pumo-Chr9 8574306 8582548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00536 5 493 Miscellaneous Gene Families AT4G31670 65.644 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00536 K11855 - gmx:100820594 1004.59