Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00420 ATGGCCACGGATTCCCATGCTAACTTGTCAGATTCTTGGACAATAGGGGAGCGCATGTGTGCGGCGTTGATGCCATTCATAGCGGTGGTTGAGGTTTTGATGTTGGCGGTGACAGGTTGTTTCAGCTATTGCCCATGCAACATTATTCAGAACCATAAACGTACCTATACTGCTAAGGTTTTCGCAAGCCTTGCTGATGAAACCAGATTTACAGTTAATGAAGTGGAGGCATTGGATGTGTTGTTTAAAAGGTTAAGTAGCTCCCTAATTGATGATGACTCGATTCACAAGGAGGAGCTTCGATTGGTACTGTTTAAGACCCCAAATGGAGAAAATCTTTTCCTGGATCGAGTTTTTGATGTTTTTGACCAAAAAAGAAACGGTGTAATCGAGTTTGACCAATTTGTCCACGCGCTCAGTGTTTTCCATCCAGATGCCCCCATAGATGAAAAAATTGATTTTGCATTTAAGCTCTATGACTTGAGGCAAACTGGGTTTATCGAGCCAGAGGAAGTCAAGCAAATGGTTGTAGCCATTCTGATAGAATTTGACACGAATCTTCCTGATGATCTTCTCGAAGCAATTGTTGACAAGACAATTGCTGACGTGGATAAGGACAATGATGGTAAAATCAGTAAAGAAGATTGGAAAGCTTTTGTGAGTCGAAATCCATCCCTCTTGATAAACATGACACTTCCTTATTTGAAGTATGGATTATAA 720 0.4111 MATDSHANLSDSWTIGERMCAALMPFIAVVEVLMLAVTGCFSYCPCNIIQNHKRTYTAKVFASLADETRFTVNEVEALDVLFKRLSSSLIDDDSIHKEELRLVLFKTPNGENLFLDRVFDVFDQKRNGVIEFDQFVHALSVFHPDAPIDEKIDFAFKLYDLRQTGFIEPEEVKQMVVAILIEFDTNLPDDLLEAIVDKTIADVDKDNDGKISKEDWKAFVSRNPSLLINMTLPYLKYGL 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00420 239 ProSitePatterns EF-hand calcium-binding domain. 204 216 IPR018247 -
Pumo9g00420 239 ProSiteProfiles EF-hand calcium-binding domain profile. 110 145 IPR002048 GO:0005509
Pumo9g00420 239 PRINTS Recoverin family signature 211 231 - -
Pumo9g00420 239 PRINTS Recoverin family signature 56 70 - -
Pumo9g00420 239 PRINTS Recoverin family signature 165 183 - -
Pumo9g00420 239 PRINTS Recoverin family signature 118 139 - -
Pumo9g00420 239 ProSiteProfiles EF-hand calcium-binding domain profile. 191 226 IPR002048 GO:0005509
Pumo9g00420 239 ProSiteProfiles EF-hand calcium-binding domain profile. 147 182 IPR002048 GO:0005509
Pumo9g00420 239 Gene3D - 62 238 - -
Pumo9g00420 239 Pfam EF-hand domain pair 150 219 IPR002048 GO:0005509
Pumo9g00420 239 PANTHER CALCINEURIN B 53 236 IPR045198 GO:0005509|GO:0019722|GO:0019900
Pumo9g00420 239 CDD EFh 151 221 IPR002048 GO:0005509
Pumo9g00420 239 FunFam calcineurin B-like protein 3 60 237 - -
Pumo9g00420 239 SMART efh_1 114 142 IPR002048 GO:0005509
Pumo9g00420 239 SMART efh_1 195 223 IPR002048 GO:0005509
Pumo9g00420 239 SMART efh_1 151 179 IPR002048 GO:0005509
Pumo9g00420 239 SUPERFAMILY EF-hand 64 234 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00420 Pumo-Chr9 6645975 6654831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00420 7 198 EF-hand Containing Proteins AT4G33000 59.896 1.18e-75 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00420 K06268 - gmx:100810494 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00420 9 6645975 6654831 Pumo9g00420 9 6645975 6654831 ECH