Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00410 ATGGCTCTCGTGACTCGAACCGGAACCACGTGGCGCCTCCCTCAGCGGCTAGTTTCCGCGTCCCTCCACATCAGTTCATCCGGCGGCGTCGCCCCCACAAGTTACTGTGCGCCGCCGCCGCCGGCGACTTCTTCCCCCGTCGGCGTGTCGAAGCCAGCGGAGTTCGTGATCTCGAAGGTGGATGCGCTCCTGAACTGGGCCCGTACCGGGTCCATCTGGCCCATGACGTTTGGGCTGGCCTGCTGCGCCGTGGAGATGATGCACACGGGTGCGGCCCGCTACGATCTGGACCGCTTTGGAATCATCTTCAGGCCCAGCCCACGCCAGTCCGATTGCATGATCGTTGCAGGCACACTCACCAACAAGATGGCCCCTGCTCTTCGCAAGGTTTATGATCAAATGCCTGAGCCTAGGTGGGTGATCTCAATGGGAAGTTGTGCTAATGGAGGTGGATACTACCACTATTCTTATGCTGTTGTCAGAGGATGTGACAGAATTGTTCCTGTTGACATATACATTCCAGGTTGTCCTCCAACTGCTGAGGCTTTGCTATATGGCCTCCTCCAGCTACAGAAGAAGATCAATAGGCGCAAGGACTTCCTCTGGTGGTGGACCAGGGATAATGGGTATTCTAGCTCTTATATGGGGGAATACGTAGTTGCTGTAATTTGTGGGATGGAATACGCTTGTGTGCTACGCGACTTCCTCTCTTCCCATCCCGAGGCGCATTTGCGCGACGAGAAGACAAAGGGCTTCGCCTATGGCCGCCTCGCTGATCTTCTGCGACTTCTCTATGGCCACACCGTGCTGGAGCTCTTGGACACGAGAGGCTTCGCGGTTTCAGAGTTGCTGCACGATCTTCGCCACTTCTCTTTTGGGGGCACCTGGCTTGATTCTCTTGAACACCATTTTGCAACTTCTTGTGGTTCCCGTCTCGACGTTTCTTGTCACGCCCTAAGAAAGTTGGAGGATGCTGTGACCCTCCGTGCGAAGGCTCCGATTGGAAAGGTGTGA 1014 0.5582 MALVTRTGTTWRLPQRLVSASLHISSSGGVAPTSYCAPPPPATSSPVGVSKPAEFVISKVDALLNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYIPGCPPTAEALLYGLLQLQKKINRRKDFLWWWTRDNGYSSSYMGEYVVAVICGMEYACVLRDFLSSHPEAHLRDEKTKGFAYGRLADLLRLLYGHTVLELLDTRGFAVSELLHDLRHFSFGGTWLDSLEHHFATSCGSRLDVSCHALRKLEDAVTLRAKAPIGKV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00410 337 ProSitePatterns Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 162 178 IPR006138 GO:0008137|GO:0048038|GO:0051539
Pumo9g00410 337 PANTHER NADH DEHYDROGENASE 50 205 - -
Pumo9g00410 337 FunFam NADH-quinone oxidoreductase subunit B 2 48 206 - -
Pumo9g00410 337 Hamap NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 47 195 IPR006138 GO:0008137|GO:0048038|GO:0051539
Pumo9g00410 337 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 81 190 IPR006137 GO:0051536
Pumo9g00410 337 NCBIfam NADH-quinone oxidoreductase subunit B 55 196 IPR006138 GO:0008137|GO:0048038|GO:0051539
Pumo9g00410 337 SUPERFAMILY HydA/Nqo6-like 54 207 - -
Pumo9g00410 337 Gene3D - 45 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00410 Pumo-Chr9 6526909 6529914 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00410 K03940 - gmx:100814025 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00410 9 6526909 6529914 Pumo9g00410 9 6526909 6529914 ECH
Pumo9g00410 9 6526909 6529914 Pumo10g00268 10 3638684 3641203 PCT