Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02617 ATGGCTCTGTCTTTTGGCCTCTTCTCTTCTTGTTCTGTTCTGCCACCACCAGACACTCTTACTTTCATGAGGCCTTCTCCTTCTCCTTCTCCTTCTGGTTCTGGGTTGCGCATGCTGCGAACTATTACCTCTTGCACCCTCTCTCACTCTGAGCCACCCACACGCAAAATCCGTGGTATCATGAAACCCCGCAAAGTCTCCCCCGAGATGGAAGCCCTCGTCGGCGCTCCCGAGATTTCTCGAACCCAAGTCCTCAAACGGATTTGGGCTTACATTAAGGACAACAATCTTCAGGACCCTACAGACAAGAGGACTATAAATTGTGATGAGAAGCTGAAGAAGGTGTTTGCAGGGAAAGATCGAGTTGAAATGCTTGAGATTGCTCGCTTGATTAGCCCTCACTTCCTTAAAAGTGAAAGTTAA 423 0.4846 MALSFGLFSSCSVLPPPDTLTFMRPSPSPSPSGSGLRMLRTITSCTLSHSEPPTRKIRGIMKPRKVSPEMEALVGAPEISRTQVLKRIWAYIKDNNLQDPTDKRTINCDEKLKKVFAGKDRVEMLEIARLISPHFLKSES 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02617 140 Pfam SWIB/MDM2 domain 62 135 IPR003121 -
Pumo8g02617 140 CDD SWIB-MDM2_like 64 135 - -
Pumo8g02617 140 ProSiteProfiles SWIB/MDM2 domain profile. 59 137 IPR003121 -
Pumo8g02617 140 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 51 137 - -
Pumo8g02617 140 SMART swib_2 60 140 IPR019835 -
Pumo8g02617 140 Gene3D SWIB/MDM2 domain 54 140 IPR036885 -
Pumo8g02617 140 SUPERFAMILY SWIB/MDM2 domain 56 138 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02617 Pumo-Chr8 63343126 63345100 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pumo8g02617 SWIB 1.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02617 - - gmx:100499975 207.608
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02617 8 63343126 63345100 Pumo8g02617 8 63343126 63345100 ECH