Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02611 ATGGGTGAAGAGAAATCGAATCCGAAACTAACTCTATTGCCACTGATAGCTCTGATATTCTATGAAGTATCCGGGGGTCCTTTTGGAGTAGAGGATTCGGTGAGGGGTGGAGGCGGTCCTCTTTTCTCATTGCTCGGGTTCTTGCTTTTCCCTCTCATATGGAGTATACCAGAAGCTCTTGTTACGGCCGAACTTGCCACCACTTTCCCTCAGAACGGTGGATATGTTATCTGGATTTCCTCAGCCTTTGGACCCTTTTGGGGCTTTCAGGAAGGCTTTTGGAAATGGTTCAGTGGGGTCATGGACAATTCTCTTTACCCCGAAGTTTTAGGTTTAGGTTTATCGGAAGAAGATTACGACCTAATGTATGGTTCTGAATCGGGATGGGTGGATGTTCGAAGTTGGTGCGACCACCTAGGGTCCTTATCGAGCGATCTGAGGCACATTCCGGGCCCTGATACTCCGTGCCATTGCTGCCAACACCCCACTGAAAACTGGTTGTGTCTCTCCTGCAAGCAGGTCCTCTGTAGCCGTTTTGTGAACAAGCACATGCTCCAACATTTTCGGGACACAAATCACATTCACACCATCGCCCTCAGTTTCAGTGATCTCTCCGTCTGGTGTTTCTCCTGCGACGCTTACTTGGATCCTCAACTCATTCCCCAACTGCGTCCCGTTCATCAACTCGCCTATATATTGAAATTCGGTCAGCCTCCACCACTCCCACCAAATCAACATCAACCTTCATCTGCAACTTGA 759 0.4875 MGEEKSNPKLTLLPLIALIFYEVSGGPFGVEDSVRGGGGPLFSLLGFLLFPLIWSIPEALVTAELATTFPQNGGYVIWISSAFGPFWGFQEGFWKWFSGVMDNSLYPEVLGLGLSEEDYDLMYGSESGWVDVRSWCDHLGSLSSDLRHIPGPDTPCHCCQHPTENWLCLSCKQVLCSRFVNKHMLQHFRDTNHIHTIALSFSDLSVWCFSCDAYLDPQLIPQLRPVHQLAYILKFGQPPPLPPNQHQPSSAT 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02611 252 SUPERFAMILY RING/U-box 134 226 - -
Pumo8g02611 252 PANTHER HISTONE DEACETYLASE-LIKE PROTEIN 116 244 - -
Pumo8g02611 252 ProSiteProfiles Zinc finger UBP-type profile. 134 237 IPR001607 GO:0008270
Pumo8g02611 252 Pfam Zn-finger in ubiquitin-hydrolases and other protein 156 217 IPR001607 GO:0008270
Pumo8g02611 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 238 IPR013083 -
Pumo8g02611 252 Gene3D Amino acid/polyamine transporter I 6 122 - -
Pumo8g02611 252 Pfam Amino acid permease 13 105 IPR002293 GO:0016020|GO:0022857|GO:0055085
Pumo8g02611 252 SMART Zf_UBP_1 155 206 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02611 Pumo-Chr8 63303702 63308685 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02611 5 107 Organic Solute Cotransporters AT3G19553 87.379 1.73e-49 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02611 - - aprc:113869857 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02611 8 63303702 63308685 Pumo8g02611 8 63303702 63308685 ECH