Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02603 ATGGATGCTTTCTATGCTGCTGTTGAGACTTTAAGTAACCCTACTTTAAAGGGCAAGCCTATGGCTGTTGGGAGCATCTCCATGATATCCACTGCCAACTATGAGGCCCGGAAATTTGGGGTTCGAGCTGCCATGCCTGGCTTCATTGCACGTAAGCTATGTCCAGAATTAATCTTTGTCCCAATAGATTTCAAAAAGTATACTTATTACAGTGATTTGACCAGAACAGTTTTTCGGAGGTATGATCCCAATTTCATTGCTGGTAGCCTGGATGAAGCATACCTTGATATAACTCAAGTTTGCAGAGAAAGGAATGTCAAAAGTGAACAAATTGCCCAAGAACTCAGAGCTGGTGTTTATGAAGAGACTGGTCTCACATGCAGTGCTGGAGTGGCACCAAATCGCTTACTTGCTAAGGTTTGTTCAGACATAAACAAGCCAAATGGACAGTATGTTTTGCCAAATGACCGCATGGCTGTTATGACCTTTGTATCCTCCCTTCCTATCAGAAAGATTGGGGGCATTGGTAAGGTCACTGAACATATTTTGAAGGGAGTTTTTGGAATTAACACATGTGAGCAGATGCTGGAGAAGAGTAGCTACCTTTGTGCACTTTTCTCTCAGTCAACAGCAGAATTTTTTTGCTCTGTAGGTTTAGGTCTTGGGCAGACAGATTCTCCCCAAGTAAGATTTCGGAAAAGTATTAGTAATGAAAGAACATTTTCTGCCACCAAGGATGAAGTGCTGTTGCATAAAAAATTGGAGGAGCTTGCTGAAATGCTATCAGCCGACATGCAAAAAGAGGGTCTGTCTGGGCGAACATTGACTCTTAAACTAAAAACTGCTTCTTTTGAGGTTCGAACTAGAGCTGTGACATTACAGAAGTACATCAGCTCAAGTGAGGATATTTTGAAGCATGCTAAAAAGTTGCTACAAGCTGAACTTCCTATTTCAGTAAGATTGATAGGCCTTAGAGTATCACAGTTCAATGGAGACAAGTGTAGTGCTAAGTCTGATCCTACACAGAAGACCATTACCAATTTCATTACTTCGGGAGATGCCAATAGAAATTGTAGTTCTTTTCCAGATGTTGCAGATCATGAATTTGTCAGTAATGCAGAAACTGATCTTTCCATTGACAGTCGGACAAGTCAACTTGATTGGAGAGATCCTTTTGATGGTAATCATTCATCAGATGTAGACTACCAAAGCTGCATTGTCCAGAAAAATGATGGCGTAGAGGAGGTGCAAACATCTAGTAATGATGCTACAAGTTCTCACTACAGTGGATTTACAGAAGTGCTGGGATCAACTTCTTACCAGGGGCAGTTTGAAGGCATAAATGTGAAGAATGTGTCTAATCTCCTGGAGGATGAGAGACTTGATTCTTGTTGTCAGGAGAAGACAATGCTGTGGTTGAATGACTACAAATGTTCACTTTGTCGAATAGAACTGCCTCCAAGTTTTGTTGAGGAGAGATTGGAGCACTCTGATTTTCATCTTGCTGAAAAGCTTCAAAAGGAAGAATCTAGGATTCACCAAACATCTGTTCCGAGTCAAAGAGGTCAGAAGAATGGAATCACTAGACAAAGCAAATCCAAGAAGCAAAAGTTGTCGCAGAAAGAAGGCAGTTATACACCCATTGATTATTTTTTTGTTAAAAAGTAA 1668 0.4071 MDAFYAAVETLSNPTLKGKPMAVGSISMISTANYEARKFGVRAAMPGFIARKLCPELIFVPIDFKKYTYYSDLTRTVFRRYDPNFIAGSLDEAYLDITQVCRERNVKSEQIAQELRAGVYEETGLTCSAGVAPNRLLAKVCSDINKPNGQYVLPNDRMAVMTFVSSLPIRKIGGIGKVTEHILKGVFGINTCEQMLEKSSYLCALFSQSTAEFFCSVGLGLGQTDSPQVRFRKSISNERTFSATKDEVLLHKKLEELAEMLSADMQKEGLSGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAKKLLQAELPISVRLIGLRVSQFNGDKCSAKSDPTQKTITNFITSGDANRNCSSFPDVADHEFVSNAETDLSIDSRTSQLDWRDPFDGNHSSDVDYQSCIVQKNDGVEEVQTSSNDATSSHYSGFTEVLGSTSYQGQFEGINVKNVSNLLEDERLDSCCQEKTMLWLNDYKCSLCRIELPPSFVEERLEHSDFHLAEKLQKEESRIHQTSVPSQRGQKNGITRQSKSKKQKLSQKEGSYTPIDYFFVKK 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02603 555 ProSiteProfiles Zinc finger UBZ3-type profile. 471 508 IPR041298 -
Pumo8g02603 555 FunFam DNA polymerase kappa 135 225 - -
Pumo8g02603 555 Gene3D - 151 225 - -
Pumo8g02603 555 FunFam Polymerase (DNA directed) kappa 6 58 - -
Pumo8g02603 555 Gene3D - 3 58 - -
Pumo8g02603 555 Pfam impB/mucB/samB family 1 143 IPR001126 GO:0006281
Pumo8g02603 555 MobiDBLite consensus disorder prediction 512 533 - -
Pumo8g02603 555 Gene3D - 230 336 IPR036775 GO:0003684|GO:0006281
Pumo8g02603 555 ProSiteProfiles UmuC domain profile. 1 176 IPR001126 GO:0006281
Pumo8g02603 555 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 230 327 IPR036775 GO:0003684|GO:0006281
Pumo8g02603 555 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 1 553 - -
Pumo8g02603 555 CDD PolY_Pol_IV_kappa 1 329 IPR022880 GO:0003887
Pumo8g02603 555 PIRSF DNA_pol_eta 1 110 - -
Pumo8g02603 555 PIRSF DNA_pol_eta 325 555 - -
Pumo8g02603 555 PIRSF DNA_pol_eta 105 360 - -
Pumo8g02603 555 FunFam DNA polymerase IV 229 336 - -
Pumo8g02603 555 SUPERFAMILY DNA/RNA polymerases 1 223 IPR043502 -
Pumo8g02603 555 Gene3D - 59 150 IPR043128 -
Pumo8g02603 555 MobiDBLite consensus disorder prediction 507 541 - -
Pumo8g02603 555 FunFam DNA polymerase kappa subunit 57 151 - -
Pumo8g02603 555 Pfam impB/mucB/samB family C-terminal domain 232 334 IPR017961 GO:0003684|GO:0006281
Pumo8g02603 555 Pfam Ubiquitin-Binding Zinc Finger 475 508 IPR041298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02603 Pumo-Chr8 63264620 63268178 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02603 K03511 - gmx:100816973 1036.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02603 8 63264620 63268178 Pumo8g02603 8 63264620 63268178 ECH