Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02349 ATGGAAGATCTTCGGAATTCGACGCTTAAATTCTTCTCCGATCAAGAGCTTTGTTATGCTGATATCGTCCCTCCTGCTCAGGTCCGAGCCAGAATTGAAGTGTCTGTCCTTAATTTTCTCAAAATATTAAACGCATCCAACCCTGCCATCTCAGATTTGCCTTTGATTCAGAGAAAATATAGCAACAGTCGAGTCAATCATGGTCTGTTGACTGAACTGTCACGTGTTTTTCTCTCCAATTCCGTATCGACAAGGTCTCTGATGAGACCTAATGCTGCAAAGGCCTTTGTTAGGGTGTGGAAGGTGATGGAAATGTGCTATCAGATTTTGCTACAGGAAAAGCGTGTCACCCAGAGGGAGCTCTTCTACAAGCTGCTGTGTGATTCGCCGCACCTGTTTCCTTCTCAAACACATGTCAACAGGACAATCCAAGATCTTGTAGCATTGCTTCGGTGCAGCCGATACAGTCTTGGAATCATGGCATCTAGTCGAGGACTCGTAGCTGGCCGTCTGATGTTACAGGAACCGGGCAAAGAGGCTGTTGATTGCTCTTTATGTGGTTCTTCTGGATTTGCAATATCTGGTGACTTGAATTTGTTGGATAATTTGGCTCTAAATGCAGATGCTCGGTACGTTATAATTGTAGAAAAGCATGCAATATTTCAACGGCTTACTGAGGATCGGTTTTTTCATCAAATCCCAAGCATTCTTATCACGGCTAAAGGTTACCCAGATATGGCCACAAGATTTCTTCTTTATCGAATCAGTCGAGCTTTTCCAGACTTGCCAATTCTAGCTTTGGTGGATTGGAATCCAGCTGGATTAGCTATTCTATGCACCTTCAAATTTGGAAGTGTAGGAATGGGGCTAGAGGCATACAGATATGCTTGCAACGTCAAGTGGTTAGGACTGCGGGGGCATGATCTACCCTTGCTGCCTGACCAATCTTTGGCTCCATTGAAGCCAAAGGATCTGCAAATTGCTCAAAGCTTGATGTCCTCGGGAATCTTACAGGATAATTACAAGGAAGAAGTAGCCTTAATGGTTCAGAGCGGAAGGAGAGCTGAAATCGAGGCCCTGTACTTTCATGGATATGATTATTTGGGGAAGTACATAGCTAAAAAAATTGTACAGTCCGATTATGTAAGTCTAATTTGTGGAACTGAGCCGCCACTGCAGACTGCCAAGCCTCCTCAACGTCAACGGCTATGGCAGCATCTTCCTTTACAACATCTTCCATCCTCTTCCCATTCACAACTACCTCTAAATCCCCTCCTCAACTATTTGCCACTTTTCCTTGCAAACACCATACCCTCCGTCTTAGACCTGTCTCAGCCTCAGCCGCTTCAACTCCAACCCCCTCCATCCGAAGTCGACAAATCTCCAGTCTCCGCCACTCCCTCCAAGGTTCTTCCCTTTCGGGTCGGCCACGGCTTTGACCTCCATCGATTGGAACCCGGTTACCCCCTAATCATCGGTGGAATTAACATTCCCCACGATAGAGGTTGTGAGGCTCATTCCGATGGGGACGTTCTGCTTCACTGCGTAGTTGATGCTATTTTAGGGGCGTTGGGTCTTCCTGATATTGGCCAAATTTTTCCCGATTCTGATCCTAAGTGGAAGGGCTGTGCCTCTTCTGTCTTCATCCAAGAATCTGTGAGACTTATGCATGAGGCTGGTTATGAGATTGGAAATTTAGATGCTACATTGATACTTCAGAGGCCGAAACTAAGCCCACACAAGGATACTATCAAGGCCAACTTATCTGCACTGCTTGGAGTGGACTCTTCTGTAGTAAATATCAAAGCAAAAACTCATGAAAAGGTAGACAGCCTTGGAGAAAATAGAAGTATAGCGGCTCACACAGTGGTTCTTCTAATGAAGAAATGA 1890 0.4534 MEDLRNSTLKFFSDQELCYADIVPPAQVRARIEVSVLNFLKILNASNPAISDLPLIQRKYSNSRVNHGLLTELSRVFLSNSVSTRSLMRPNAAKAFVRVWKVMEMCYQILLQEKRVTQRELFYKLLCDSPHLFPSQTHVNRTIQDLVALLRCSRYSLGIMASSRGLVAGRLMLQEPGKEAVDCSLCGSSGFAISGDLNLLDNLALNADARYVIIVEKHAIFQRLTEDRFFHQIPSILITAKGYPDMATRFLLYRISRAFPDLPILALVDWNPAGLAILCTFKFGSVGMGLEAYRYACNVKWLGLRGHDLPLLPDQSLAPLKPKDLQIAQSLMSSGILQDNYKEEVALMVQSGRRAEIEALYFHGYDYLGKYIAKKIVQSDYVSLICGTEPPLQTAKPPQRQRLWQHLPLQHLPSSSHSQLPLNPLLNYLPLFLANTIPSVLDLSQPQPLQLQPPPSEVDKSPVSATPSKVLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCASSVFIQESVRLMHEAGYEIGNLDATLILQRPKLSPHKDTIKANLSALLGVDSSVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02349 629 SUPERFAMILY DNA topoisomerase IV, alpha subunit 93 382 IPR036078 GO:0003677|GO:0005694
Pumo8g02349 629 PRINTS DNA topoisomerase VI subunit A family signature 154 169 IPR002815 GO:0003677|GO:0003918|GO:0005694
Pumo8g02349 629 PRINTS DNA topoisomerase VI subunit A family signature 236 257 IPR002815 GO:0003677|GO:0003918|GO:0005694
Pumo8g02349 629 PRINTS DNA topoisomerase VI subunit A family signature 212 229 IPR002815 GO:0003677|GO:0003918|GO:0005694
Pumo8g02349 629 PRINTS DNA topoisomerase VI subunit A family signature 136 153 IPR002815 GO:0003677|GO:0003918|GO:0005694
Pumo8g02349 629 PRINTS DNA topoisomerase VI subunit A family signature 269 285 IPR002815 GO:0003677|GO:0003918|GO:0005694
Pumo8g02349 629 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 26 381 IPR002815 GO:0003677|GO:0003918|GO:0005694
Pumo8g02349 629 Hamap 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 473 628 IPR003526 GO:0008685|GO:0016114
Pumo8g02349 629 NCBIfam 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 474 628 IPR003526 GO:0008685|GO:0016114
Pumo8g02349 629 FunFam 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 470 629 - -
Pumo8g02349 629 Pfam YgbB family 473 626 IPR003526 GO:0008685|GO:0016114
Pumo8g02349 629 CDD TOPRIM_TopoIIB_SPO 210 367 IPR034136 -
Pumo8g02349 629 Gene3D - 22 162 IPR036388 -
Pumo8g02349 629 Gene3D - 470 629 IPR036571 GO:0008685|GO:0016114
Pumo8g02349 629 FunFam Meiotic recombination protein SPO11-2 18 162 - -
Pumo8g02349 629 SUPERFAMILY IpsF-like 472 628 IPR036571 GO:0008685|GO:0016114
Pumo8g02349 629 Pfam Type IIB DNA topoisomerase 94 159 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Pumo8g02349 629 CDD MECDP_synthase 474 626 IPR003526 GO:0008685|GO:0016114
Pumo8g02349 629 ProSitePatterns 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 507 522 IPR020555 GO:0008685
Pumo8g02349 629 Gene3D - 163 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02349 Pumo-Chr8 60721754 60728476 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02349 K10878 - gmx:100784732 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02349 8 60721754 60728476 Pumo8g02349 8 60721754 60728476 ECH