Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02272 ATGGATGATGACCTTTTCCAGAGAGCACCATCTGGTGTCATAAAAGCGATAAAGTTTGATGTCTTAACTCAAGAAGATATAGAGAATATCTCTGTTTTGGAGATAAATGCAGTTGGACAGGTTACTGGATCAAATTTGGGATTCCCAAATGCATCTGAAGAGTGTATCACATGTGGCTCTAGAGACAAAAAGTTCTGTGAAGGTCATTTTGGAGTAATCAAATTTCCTTTTGCCATACTCCATCCATATTTTATGTCAGAAATTGCACAGATTCTGAACAAGATTTGCCCTGTTTGTAAATCTATTCGTCACGAATCCAAGGGTGCTCAATTAATCTTTGGAACCAAGCAGTCTAATGGTTGCAAATATTGTTTTGTGCGTGGTTATCCATCAATGAAATTCAGAGTTTCCTCCAATGATCTCTTTAGAAGAACTGCAATTATTGTTGAAGTAAATAATAAGGCCTCAAAGAAAACTTTGGGGCGACCAATTCCTGCTGATTATTGGGATTTTCTTCCTAATGATGCTCAACAAGAAGAAAATTATGTAAATAGAAGGGTTTTATCACCTGCGCAGGTTATTTCTTTGTTGAATGATGTTGATCAAGACTTTATTGAAAAATATATTCCAAGAAAGAATTTGCTCTGTCTTAATTGCTTCCCGGTGACTCCAAATTGTCATCGTGTGACAGAAGTCCCTTATGCAATTTCTAGTGGAAGCCGATTGAGTTTTGATGACAGGACTCGATCTTGTAAGAAATTGGTTGATTTCAGGGGTACAGCCAATGAGTTAAGTTCTCGTGTTTTGGATTGCCTGAGGATCTCTAAGCTGAATCCTGATAAAACACCAAATAGTATTTTTGCTGATATCCAGCAAAGAAAGATTGGAGAAAATGCTTGCAATTCTTCTGGTTTAAGATGGATAAAAGATTTGGTTCTTGGAAAACGCAATGATAGTTCATTCCGTACTGTGGTTGTTGGTGATCCAGACCTTGAGCTTAGTGAAATTGGTATACCTTGTCATATTGCTGAAAGTTTGCATGTTTCTGAGCATGTGAATAGGCAGAATAGGGAGAAGATGCTTTATTGTTGTGAGCTACGCTTGTTAGAGAAGGGTCAAGTAAATGTCTGCAGAAAGGGTAGTATAGTTCATCTGTATAAAAAGGAAGATCTACAAATAGGTGACAAATTTTATAGGCCTCTTGCTGATGGGGATAAAGTGCTGATAAATAGGCCCCCTTCCATACATCAACATTCTATGATTGCTCTCACAGTTAGGGTCCTTCCAATATCTTCTGTAGTGTGTATTAACCCACTCTGTTGTTCCCCACTACGTGGGGATTTTGATGGTGATTGCCTTCACGGGTACATTCCACAATCAGTTAGTGCAAGAGTTGAGCTTAATGAGCTGGTTGCTTTAGATAGGCAATTGATTAATGGGCAAAGTGGTAGAAATCTGCTTTCACTTTCCCAGGATAGTTTGACTGCTGCATATTTGCTAATGGAAGATGGGGTCCTTTTGAATGCTTATCAAATGCAGCAGCTTCAAATGCTTTGTAACAAAAGATTGACACCTCCTGCAGTTGTTAAATCTCCTTCAAGTAATAGCTCATTATGGAGTGGCAAGCAATTGTTCAGCTTGCTCTTGCCCTCTGATTTTGACTATTCTTTTCCTTCAGATGGTGTTGTTGTTAGTGATGGGGAGCTTGTATCTTCTTCTGAGGCTTCTGGTTGGTTACGCGATTCTGACTGCAATGTTTTCCAGAGTCTTGTGGAACATTTTGAAGGGAGGACTCTAAACTTTTTGTACGCGGCGCAGAAAGTTCTGTGCGAGTGGCTGTCTATGACAGGTTTTAGTGTTTCACTCTCAGATTTGTACCTTTCTTCTGATTCCTATGCACGAAAAAACATGATGGAGGAAATCTTTTATGGCTTACAAGATGCAGAGCAGGCATGTAATTTCAAGCAGCTATTGTTGGATTATTATTGTGATTTTCTGTCAGGAAGTCTCCAAGAGAGTGAAAATGCTATGACTGTTGATGCGGATCGTCTGAATTATGAAAGACAAATATCTGCTGCTCTCAGTCAAGCGTCAGTTGATGCTTTTAGGCAAGTTTTTCGCAATATTCAAAGTTTAGCTGACAGATATGCATGTAAGGACAATGCTTTCCTTGCTATGATTAAGGCTGGAAGCAAGGGTAATTTGCTGAAATTAGTTCAACATTCCATGTGCCTTGGCATGCAAAATTCTCTGGTCCGCTTGTCATACAGACTACCCCGTCATCTTTCATGTGCTGCTTGGAATAGTCAAAAGTGGCTTGATTCAATCCAGATGTCTTCTGGTACCCTTGAATCTGTTCAGTCTTACATTCCATATGCTGTGGTTGAAAGCTCATTTTTAACTGGGTTGAATCCACTTGAATGTTTTGTTCATTCAGTGACAAATCGTGATAGCTCTTTCAGTGACCATGCGGACCTTCCTGGAACATTGACACGTAGACTTATGTTCTTCATGCGTGATTTGTATGATGGATATGATGGAACAGTAAGAAATTTATATGGTAATCAACTTATTCACTTTTCTTATGATATTGAAGAGGACTCTTCATGTGATAAAAGTTTCCAAGAGTATGCTATAGGTGGTGAATCAGTTGGGGCACTTTCTGCTTGTGCAATTTCTGAAGCTGCATACAGTGCTTTGGGTCAACCAGTTAGTCTACTCGAAACATCACCTTTGCTGAATTTGAAAAATGTTCTGGAGTGTGGTTCAAGGAAAAAAAATGGTGATCAGACTGCGTCTTTATTTTTGTCTGAAAAGCTTGGTAAACAGAGATATGGGTTTGAATATGCAGCTTTAGAAGTCAAGAATTATTTGGAAAGATTGTTGTTCTCAAACATTGTTTCTACAGTGATAATAATATTCACCCCACATGACGGCAGCTGCCAAGAAAAATACAGTCCTTGGGTCTGCCACTTTCATTTAGACAAGGAAATTGTAACAAGAAGAAAATTGAAAGTGCATTCTATCATTGACTCTCTCTATCAGAGATATTACTCCCAGAGAAAAGAATCAAAAGGTTTTACCAATTTGAAAATTTCAAGCAAGAAGTGTTCTGCTGATACCATGGCTAAGGAAGGTGAAGACACTTCTATAGATAGAGAAGAGGGTGATGATTGCATCACGGTCACAATTGTTGAAAACTCTAAGAATCCTATACAACTGGATTCTGTTCGGGACTTGGTGATACCTTTTCTTCTAGGAACAGCAATTAAAGGATTTCTGGACATCAAGAAGGTTGATATTCTTTGGAATAATCAGTCAAAAGTAACAAATTCTTACAATGGTTCTTCCGGTGAACTGTACTTGAGGGTTACTATGTCCAGCGAGGGTAACAGTGGAAGATTCTGGGGTGTACTCATAAATCATTGTCACAAGATAATGCATATAATTGACTGGACACGAAGTCATCCAGATAACATAAATCATTTCTCATCAGCCCATGGAATTGATGCAGGGTGGCAATACTTTTTCAATAGTTTGGCTTCTGCAACATCTGATACTGGCAAGTCTATCCTTCCTAAGCATTTGTGTCTTGTTGCCAATAGTCTGTCAGCTAGTGGAGAGTTTGTGGGATTAAATGCTAAAGGCATGGCACGGCAAAGAAAACATGCGTCCGTATCATCACCATTTGTGCAAGCATGCTTTTCGAATCCAGGTAGTTGCTTTATAAGAGCTGCCAAGTCTGGAGTCACGGATAATCTCCAGGGCAGCCTGGATGCGTTGGCTTGGGGAAATTGTCTGCCTATGGGGACAAGTGGACTGTTTGATATCATATATTCAGAGAAGGGACATGAGGTGGCTAAGTCTGTAAATGTGTATGAGCTGCTAGAAGCCAGTTTTGACAAGCCAAACAATAAGATTAGTAGTCATTCTCACAAATATTCATCTGACAAATGCGGTTCTGAGTTTAGGCATAAAAATGGCTATGCCTTGAAAGAGGGAAAACAGTGGAAAACCATTTTAAGAAATTTTGTGACGGTAAATGATATTCAGAAGCTGACTTTTGCTTCGAGGTGCATATTGAACAAGTATTCAATTGATGAGCTGCTAAGTGATAGTGACAGGGCAACAATGCTAAGGGTTTTGAATTTTCATCCTCGTAGAAGTGAGAAGTTTGGCATTGGACCACAGGACATTAAGGTTGGATGGCATCCAAAATATAAGGATACCCGGTGCTTCCATATAATACGAAGTGATGGGACTGTTGAAGATTTTTCATACCGCAAATGCATTCTTGGTGCTCTTGATATCGTTGATCCAAAAAAGTCAAAGATCCAGGAGAAAAAATGGTCAGGACGTGGTGACACGTAA 4371 0.3926 MDDDLFQRAPSGVIKAIKFDVLTQEDIENISVLEINAVGQVTGSNLGFPNASEECITCGSRDKKFCEGHFGVIKFPFAILHPYFMSEIAQILNKICPVCKSIRHESKGAQLIFGTKQSNGCKYCFVRGYPSMKFRVSSNDLFRRTAIIVEVNNKASKKTLGRPIPADYWDFLPNDAQQEENYVNRRVLSPAQVISLLNDVDQDFIEKYIPRKNLLCLNCFPVTPNCHRVTEVPYAISSGSRLSFDDRTRSCKKLVDFRGTANELSSRVLDCLRISKLNPDKTPNSIFADIQQRKIGENACNSSGLRWIKDLVLGKRNDSSFRTVVVGDPDLELSEIGIPCHIAESLHVSEHVNRQNREKMLYCCELRLLEKGQVNVCRKGSIVHLYKKEDLQIGDKFYRPLADGDKVLINRPPSIHQHSMIALTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQSVSARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYLLMEDGVLLNAYQMQQLQMLCNKRLTPPAVVKSPSSNSSLWSGKQLFSLLLPSDFDYSFPSDGVVVSDGELVSSSEASGWLRDSDCNVFQSLVEHFEGRTLNFLYAAQKVLCEWLSMTGFSVSLSDLYLSSDSYARKNMMEEIFYGLQDAEQACNFKQLLLDYYCDFLSGSLQESENAMTVDADRLNYERQISAALSQASVDAFRQVFRNIQSLADRYACKDNAFLAMIKAGSKGNLLKLVQHSMCLGMQNSLVRLSYRLPRHLSCAAWNSQKWLDSIQMSSGTLESVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDHADLPGTLTRRLMFFMRDLYDGYDGTVRNLYGNQLIHFSYDIEEDSSCDKSFQEYAIGGESVGALSACAISEAAYSALGQPVSLLETSPLLNLKNVLECGSRKKNGDQTASLFLSEKLGKQRYGFEYAALEVKNYLERLLFSNIVSTVIIIFTPHDGSCQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDSLYQRYYSQRKESKGFTNLKISSKKCSADTMAKEGEDTSIDREEGDDCITVTIVENSKNPIQLDSVRDLVIPFLLGTAIKGFLDIKKVDILWNNQSKVTNSYNGSSGELYLRVTMSSEGNSGRFWGVLINHCHKIMHIIDWTRSHPDNINHFSSAHGIDAGWQYFFNSLASATSDTGKSILPKHLCLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPGSCFIRAAKSGVTDNLQGSLDALAWGNCLPMGTSGLFDIIYSEKGHEVAKSVNVYELLEASFDKPNNKISSHSHKYSSDKCGSEFRHKNGYALKEGKQWKTILRNFVTVNDIQKLTFASRCILNKYSIDELLSDSDRATMLRVLNFHPRRSEKFGIGPQDIKVGWHPKYKDTRCFHIIRSDGTVEDFSYRKCILGALDIVDPKKSKIQEKKWSGRGDT 1456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02272 1456 FunFam DNA-directed RNA polymerase subunit 481 619 - -
Pumo8g02272 1456 FunFam DNA-directed RNA polymerase subunit 1345 1436 - -
Pumo8g02272 1456 Gene3D - 623 803 IPR038120 -
Pumo8g02272 1456 Pfam RNA polymerase Rpb1, domain 4 694 754 IPR007083 GO:0003677|GO:0003899|GO:0006351
Pumo8g02272 1456 Gene3D - 1342 1433 - -
Pumo8g02272 1456 Pfam RNA polymerase Rpb1, domain 1 14 250 IPR007080 GO:0003677|GO:0003899|GO:0006351
Pumo8g02272 1456 Pfam Protein of unknown function (DUF3223) 1360 1431 - -
Pumo8g02272 1456 Gene3D RNA polymerase II, clamp domain 3 114 IPR044893 -
Pumo8g02272 1456 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 6 1280 - -
Pumo8g02272 1456 Gene3D RNA polymerase ii 347 399 - -
Pumo8g02272 1456 Gene3D - 310 480 - -
Pumo8g02272 1456 SMART rpolaneu7 213 501 IPR006592 GO:0003677|GO:0003899|GO:0006351
Pumo8g02272 1456 Pfam RNA polymerase Rpb1, domain 3 477 625 IPR007066 GO:0003677|GO:0003899|GO:0006351
Pumo8g02272 1456 CDD RNAP_IV_RPD1_N 22 850 IPR040403 -
Pumo8g02272 1456 Pfam RNA polymerase Rpb1, domain 2 314 471 IPR000722 GO:0003677|GO:0003899|GO:0006351
Pumo8g02272 1456 PANTHER DNA-DIRECTED RNA POLYMERASE 18 1278 IPR045867 GO:0003899|GO:0006351
Pumo8g02272 1456 Gene3D RNA polymerase Rpb1, domain 3 481 622 IPR042102 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02272 Pumo-Chr8 59900441 59918607 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02272 K16250 - gmx:100796185 2679.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02272 8 59900441 59918607 Pumo8g02272 8 59900441 59918607 ECH