Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02117 ATGTGCCTTCGTGTAGAAAGTGGTTCTGTAATTCTCGGGGGAACACTTCGGGATCGCATATCGTCAATCACCTGTGGTGGGGTTGGGCGTTTAGGAATTGAGGACTATAGGAAGGTTCGGGCTAAACACAAGGAAGTCTGCCTACATAAAGATAGTCCGTTGGGAGAAACAATTCTTGAATGCTACAATTGTGGATGTCGTAATGTGTTTCTCCTTGGATTTATTTCTGCAAAGACGGAAAGTGTAGTTGTCCTTCTTTGTCGTGAACCTTGCTTGAGTGTTAATGCCTTGAAGGACATGAATTGGGACCTTAGTCAATGGTGCCCCTTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTCAAGATCCCATCTGAACAGGAGCAGTTAAGGGCTCGCCAAATAAGTGCACAACAAATAAATAAGGTGGAAGAGTTGTGGAAGACAAATCCTGATGCTTCTTTTGAGGACCTTGAGAAGCCTGGTGTAGATGATGAACCTCAGTCTGTGGCTTTGAAATATGAAGATGCATATCAGTATCAAAATGTATTTGCACCTCTTATTAAGCTTGAAGCCGATTATGATAAGATGATGAAAGAATCACAAAGCAAGGACAATGTCACTATCCGATGGGATATTGGTCTTAATAAGAAGCGTGTTGCATACTTTGTATTTCCAAAGGAAGATAATGAATTGCGGCTTGTACCTGGTGATGAATTACGATTGCGTTATTCTGGTGATGCTGCTCATCCTGCATGGCAGTCAGTGGGTCATGTGATTAAGCTAACTGCACAAGAGGAGGTTGCACTGGAGCTTCGTGCTAGTCAGGGGGTTCCAGTTGATGTTAACCATGGTTTTAGTGTTGATTTTGTCTGGAAAAGTACAAGTTTTGATAGGATGCAGGGAGCTATGAAAACCTTTGCTGTGGATGAGACAAGTGTTAGTGGGTATATTTATCATCACTTATTGGGTCATGAAGTTGAGGTTCAAATGGTGCGTAATGCCCTGCCTCGTCGCTTTGGTGCACCCGGGCTTCCAGAGCTGAATGCATCTCAAGTTTTTGCTGTCAAGAGTGTTCTTCAGAGGCCTATTAGTTTGATTCAAGGACCACCTGGAACTGGTAAGACCGTAACATCTGCAGCACTTGTATATCACATGGCCAAGCAAGGTCAGGGGCAGGTTTTGGTTTGTGCACCCAGTAATGTAGCTGTGGACCAGCTAGCTGAAAAGATAAGTGCTACTGGATTAAAGGTATAG 1257 0.436 MCLRVESGSVILGGTLRDRISSITCGGVGRLGIEDYRKVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKV 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02117 418 Gene3D - 311 418 IPR027417 -
Pumo8g02117 418 ProSiteProfiles Upf1 cysteine-histidine-rich (CH-rich) domain profile. 1 150 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Pumo8g02117 418 Gene3D - 203 291 - -
Pumo8g02117 418 CDD 1B_UPF1-like 203 290 IPR040812 -
Pumo8g02117 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 418 IPR027417 -
Pumo8g02117 418 Pfam AAA domain 348 413 IPR041677 GO:0004386
Pumo8g02117 418 CDD ZBD_UPF1-like 39 120 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Pumo8g02117 418 PANTHER DNA2/NAM7 HELICASE FAMILY 113 415 IPR045055 -
Pumo8g02117 418 FunFam regulator of nonsense transcripts 1 homolog 203 291 - -
Pumo8g02117 418 Pfam RNA helicase UPF1, 1B domain 202 291 IPR040812 -
Pumo8g02117 418 Pfam RNA helicase (UPF2 interacting domain) 39 150 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02117 K14326 - gmx:100795594 770
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02117 8 58113874 58121562 Pumo8g02117 8 58113874 58121562 ECH