Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01923 ATGGTCTCCGAATCCGAACTCATCGGCCGCCTCCGCGAGTTCCTCCGGATCTCCGACCTCAACACCACCACTACCGCCACCGTCCGCCGCCAGCTGGAGGCCGATTTCGGAATCGATTTATCCGACCGAAAGGCATTCATTAGGGAACAAGTCGACTTGTTCCTCCAGACCGAGCACAACCAATCACAGGAACAAGAGCAACACCAAAACAACGACGTAAAGGAAGAAGAAGATGCGCCTAATAATCCCGAACAAAGCCAACCCTCCGATTCCAAGGAAGAATCCGAAGACAACGATTCTGAAGAGGAAGAGGAACAACAACATAAACCCAAGAATGCCAAAAATGCCAAGAATAAAGGACGATCTAACAAGTTAGGTGATGAGGTAGTAAAGAAAAGAGGCGGTGGTTTTTGCAAATTATGTAGCCTGTCTCCGCAACTTCAGGAATTCATGGGAGCTCCAGAAATGGCCAGGACTGAGGTTGTTAAGAAATTATGGGCCTATATTAGGGAGAAAAATTTGCAAGACGCGAACAATAGACGAAATATAATTTGCGATGAACAATTGCGTGCCCTGTTCAATGTCAATTCCATCAACATGTTCCAAATGAATAAAGCATTGTCAAAGCATATCTGGCCATTGGATTCAGATGATGTTGTCCAGGTGAAGTCCCCTCCAAAGGAAAAACAGAAGAAGCAAGAGAGAGATGATGATTCAGATGAGCCAAAAAGAAAGGAAAAACGGCAGAAGGGAGGTGGGAAATCAGGTTTTCTTGCTCCTCTTCAGCTATCTGATGCCCTTGTAAACTTCCTTGGTACTGGAGAAAGTGAGTTATCAAGAACTGATGTCATAAAAAGAATGTGGGATTACATTAAAGGGAACAACCTTCAGGATCCTTCTGACAAGAGGAAAATAATATGTGACGAGAAGCTGAAAGAACTCTTTGATGTCGACTCCTTCAATGGCTTCACCGTTACAAAACTGCTGGCTCCTCATTTTATAAAGACAGAGCAGTGA 1017 0.4444 MVSESELIGRLREFLRISDLNTTTTATVRRQLEADFGIDLSDRKAFIREQVDLFLQTEHNQSQEQEQHQNNDVKEEEDAPNNPEQSQPSDSKEESEDNDSEEEEEQQHKPKNAKNAKNKGRSNKLGDEVVKKRGGGFCKLCSLSPQLQEFMGAPEMARTEVVKKLWAYIREKNLQDANNRRNIICDEQLRALFNVNSINMFQMNKALSKHIWPLDSDDVVQVKSPPKEKQKKQERDDDSDEPKRKEKRQKGGGKSGFLAPLQLSDALVNFLGTGESELSRTDVIKRMWDYIKGNNLQDPSDKRKIICDEKLKELFDVDSFNGFTVTKLLAPHFIKTEQ 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01923 338 CDD SWIB-MDM2_like 261 333 - -
Pumo8g01923 338 MobiDBLite consensus disorder prediction 219 258 - -
Pumo8g01923 338 Pfam DEK C terminal domain 2 55 IPR014876 -
Pumo8g01923 338 CDD SWIB-MDM2_like 141 211 - -
Pumo8g01923 338 MobiDBLite consensus disorder prediction 59 128 - -
Pumo8g01923 338 SUPERFAMILY SWIB/MDM2 domain 133 215 IPR036885 -
Pumo8g01923 338 FunFam Upstream activation factor subunit 247 338 - -
Pumo8g01923 338 MobiDBLite consensus disorder prediction 221 252 - -
Pumo8g01923 338 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 6 216 - -
Pumo8g01923 338 Gene3D SWIB/MDM2 domain 131 219 IPR036885 -
Pumo8g01923 338 Gene3D SWIB/MDM2 domain 251 338 IPR036885 -
Pumo8g01923 338 ProSiteProfiles SWIB/MDM2 domain profile. 136 213 IPR003121 -
Pumo8g01923 338 FunFam Upstream activation factor subunit 131 219 - -
Pumo8g01923 338 Gene3D - 1 59 - -
Pumo8g01923 338 Pfam SWIB/MDM2 domain 260 333 IPR003121 -
Pumo8g01923 338 Pfam SWIB/MDM2 domain 140 211 IPR003121 -
Pumo8g01923 338 SMART swib_2 137 216 IPR019835 -
Pumo8g01923 338 SMART swib_2 257 338 IPR019835 -
Pumo8g01923 338 SUPERFAMILY DEK C-terminal domain 3 56 - -
Pumo8g01923 338 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 56 IPR014876 -
Pumo8g01923 338 ProSiteProfiles SWIB/MDM2 domain profile. 256 335 IPR003121 -
Pumo8g01923 338 SUPERFAMILY SWIB/MDM2 domain 254 337 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01923 Pumo-Chr8 55691675 55696314 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pumo8g01923 SWIB 2.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01923 K15223 - gmx:100786835 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01923 8 55691675 55696314 Pumo8g01923 8 55691675 55696314 ECH