Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01880 ATGCGGATGCACTTGAGGCCGTTCTTTCGCGAGGCTAACCTGTTGAACGGGTTAACCTCGCAGTCGCAGGTGCAAGCTCGTTCCTATGCTCGTCGTCGTGAACCATTTCCCACCAAAGTTTCTCACTACCTCAACCGTGCCAAACTCATTGACTCCATTAGACTCACTCTACGCTCCAACACCCCCAACCCCTCCCTTCCCTCTCTCATAAACCACCGTCTTTTGGACTCCTTCGTGGTCACTCATGCCCTTCGTTCTGCCCCTTCTGCAGATTCCGCTCTCTCCCTTTTCCATGCCCTTGAAAAAAGTTCCCATTTTTCACACACCCACCACACGCTCCATGCACTTGCCACTGTGCTTGCCAAGTCTGGTCGGTGCTCTGAGCTCAAATCCCTCATTGATGACATCCGAGCCAACCGCTTCGGCTCTGTTCAGATCAGTTTCATGAATCTCATGCAGTGGCATGCTGTAGCTAGGGACCTTGACACTGTTCTTCAAGTGTGGGAACAGTATACACTTGAGAATAACCATCTGTGTACTGAATCTTATAACATTGTTATGACTCTTTATGCTCAAATGGGAAAGGACTTTGAGGCTGTTCGAGTTTTTCACAGGATGATTGATGGAGGGTCTCTTCCAAATTGCAGAAGCTATACTGTGATAATCGAGCACCTTGTGAAGTCCCGGAAGTTATCAGAAGCATTGGAGGTTTTTAACCTGTTGCCTTTGATGAGGATCAAACGCACCTTGAAACAGTACTCTGTTCTGCTTGAGGGTTTTGTAGGTAGCAAACAGTTTGATGAAGTGGGAATTTTAGTTGAGGAAATGCAGGTTGATGGAATATTGCCTAGTAGAGGCATGGGTCTGTTGCTGCAGCAGATGAGGGAGGAAGGAATTCTTGAAGGCAAGGAGCAATTATTGAGAGAAATTTTGCCAGATGAGAGAATCAGGAGTGTAAGTTATTCTATTGATAATGGTGATGAGGATGAGGATGAAAATGAGAATGAGGGCCAAGATGAGAATATAAGTGATGCTTGTCAATGTGATCATGTTGATGGAATTCATTTAAAACCGTGGATGGACCCACGGGCTTTGGCCAGTGCCTTGCGGAATTGGAGTCCTGATGAGGTAGCAGCACTAGAGAGTGCAAACTTTGTGTGGGCAACAAGGTTGGTTTGCAAGATGCTTAGAAATTTCAAAACACCAGAAGCTGCATGGAGTTTCTTCTGCTGGGTTGCTAATCAACATGGATTTACACATGATATATACACGGTACAAAGAATCATGACCCTTCTAGCACGCCATGGACGTACTGACTTGGTTGATAGACTCATCTCCAAGATCAGAATGGAGGGAATGAGACTACCATTCAGCACCATCAGGCTGATCATTGACTTTTATGGGATTTCAAAAAATGCTGATGCTGCTCTGAAGGTTTTCAATGATGATCGAATACTTTGTGGTCCCATATCAAATGTTAACTTGATGCTTCTGTATTCCTCTCTTCTAAGAACAATGACAAAGTGTGGAAGAAATTCTGATGCCCTGGATATGCTTGATGACATGATTTTAAATGGTATTTGCCCTGATATCCAGACATTTTCAGGCCTAATGTACCATTTTTCACAGCTTGGAGACATGAAAACAGTGCAGAAGCTCTTTGCAATGGTTAGGCAGAGCGGTCTAGAGCCAGATGCTTATTTGTATAAGGTATTAATCCAAGGTTATTGCAAGTCAAAAAGAGCTGCACTAGCATGGAGACTATTTGAAGACATGAAAAATTCAGGTTTGGTGCGTGACTCTGCCACCAAAGAGTTGCTAGTAAAGAGCCTCTGGAAAGAGGGGAGACGGAGAGAGGCTGCTGCAGTGGAAGAAAGTTATGAGGAAATAAATACGGTCCTTCCACTTGCATTGCAGGGCCATGTATGGACTGTCAGCTCTGCAGATCTCATAAGAGCTTATAATGTTTATTCAAATTCTTTTGCTTAA 1989 0.4429 MRMHLRPFFREANLLNGLTSQSQVQARSYARRREPFPTKVSHYLNRAKLIDSIRLTLRSNTPNPSLPSLINHRLLDSFVVTHALRSAPSADSALSLFHALEKSSHFSHTHHTLHALATVLAKSGRCSELKSLIDDIRANRFGSVQISFMNLMQWHAVARDLDTVLQVWEQYTLENNHLCTESYNIVMTLYAQMGKDFEAVRVFHRMIDGGSLPNCRSYTVIIEHLVKSRKLSEALEVFNLLPLMRIKRTLKQYSVLLEGFVGSKQFDEVGILVEEMQVDGILPSRGMGLLLQQMREEGILEGKEQLLREILPDERIRSVSYSIDNGDEDEDENENEGQDENISDACQCDHVDGIHLKPWMDPRALASALRNWSPDEVAALESANFVWATRLVCKMLRNFKTPEAAWSFFCWVANQHGFTHDIYTVQRIMTLLARHGRTDLVDRLISKIRMEGMRLPFSTIRLIIDFYGISKNADAALKVFNDDRILCGPISNVNLMLLYSSLLRTMTKCGRNSDALDMLDDMILNGICPDIQTFSGLMYHFSQLGDMKTVQKLFAMVRQSGLEPDAYLYKVLIQGYCKSKRAALAWRLFEDMKNSGLVRDSATKELLVKSLWKEGRRREAAAVEESYEEINTVLPLALQGHVWTVSSADLIRAYNVYSNSFA 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01880 662 NCBIfam pentatricopeptide repeat 182 215 IPR002885 -
Pumo8g01880 662 NCBIfam pentatricopeptide repeat 499 531 IPR002885 -
Pumo8g01880 662 NCBIfam pentatricopeptide repeat 568 600 IPR002885 -
Pumo8g01880 662 Gene3D Tetratricopeptide repeat domain 494 647 IPR011990 GO:0005515
Pumo8g01880 662 Gene3D Tetratricopeptide repeat domain 82 320 IPR011990 GO:0005515
Pumo8g01880 662 Pfam PPR repeat 217 240 IPR002885 -
Pumo8g01880 662 Pfam PPR repeat 182 210 IPR002885 -
Pumo8g01880 662 Pfam PPR repeat 499 527 IPR002885 -
Pumo8g01880 662 Gene3D Tetratricopeptide repeat domain 368 490 IPR011990 GO:0005515
Pumo8g01880 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 530 564 IPR002885 -
Pumo8g01880 662 PANTHER OS01G0167750 PROTEIN 5 661 IPR044175 -
Pumo8g01880 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Pumo8g01880 662 Pfam PPR repeat family 564 611 IPR002885 -
Pumo8g01880 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Pumo8g01880 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 565 599 IPR002885 -
Pumo8g01880 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01880 499 662 Glycosyltransferase AT1G05670 24.390 9.55e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01880 - - gmx:100779372 1173.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01880 8 55197434 55200000 Pumo8g01880 8 55197434 55200000 ECH