Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01835 ATGGTGCACAGCGCGTACGATTGTCTGGAGCTGGTGCCCCAGTGCCCTGCCAAGATCGAATCCATCGAATCCTACGCTTCGAAGCTTCTTCTGGGCTGCTCCGATGGATCGCTCCGAATATTCGCGCCGGAAACGGAATCTTCCTCCGACGGGTCCAAGTCCTACGCCTTGGAGAAGAACCTCGTCGGGTTCGCGAAGAAGCCGGTGATCTCAATGGCGGTGGTTGAGTCCCGAGAGTTCCTCATATCGCTCTCCGAATCCATCGCCTTCCACAGACTCCCTTCCTTCGAGACCATCGCGGTCATCACCAAGGCCAAGGGCGCCAACGTCTTCTGCTGGGACCACCGCCGAGGATTCCTCTGCTTCGCCAGGCAGAAGCGCGTTTGCATCTTCAGACACGACGGTGGCAGGGGATTTGTGGAGGTGAAAGATTTTGGTGTGGCGGATACGGTGAAGTCCATGTGTTGGTGCGGTGAGAATATATGTTTAGGGATTAGAAGAGAATATGTGATTCTGAATGCTTCGAATGGAGCTTTGTCTGAGGTTTTTACTTCTGGAAGACTAGCGCCTCCTCTGGTTGTTTCTCTTCCCTCCGGAGAACTTCTTCTTGGAAAGGAGAATATTGGAGTTTTTGTGGACCAAAATGGGAAGCTTCTTCCTGAAGGTAGGATTTGTTGGTCGGAGGCTCCTTTGGAAGTTGTAATTCAGAAGCCGTATGCTATAGCTTTGTTGCCCAGATTTGTGGAGATTCGGTCTCTCCGAGCTCCTTATCCACTGATACAGACAGTTGTTCTTCGAAATGTTCGCCATCTTTGCCAGAGCAATGATTCACTGATACTTGCTTTGGATAATTCTATTCATGGCCTCTTCCCTGTTCCCCTTGGAGCCCAGATAGTCCAATTAACAGCGTCTGGCAACTTTGAGGAGGCCTTGTCATTGTGCAAGCTTCTTCCACCTGAAGATTCAAGTCTCCGTGCTGCAAAGGAGGGTTCGATTCATATAAGATATGCTCACTATCTTTTTGACAATGGGAGCTATGAAGAGGCTATGGAACATTTTCTGGAATCTCAAGTAGAAATAACCTATGTGCTTTCCCTGTATCCATCCATTATCATTCCAAAGACAACTATTGTTCATGAGCCGGAGAAGTTGGACATTTATGGGGATGCTTCATATCTCTCCAGAGCTTCTTCAGGTGTGTCAGATGATATGGAACCCTCATCAACATCTCATATGTCAGAATCTGATGAGAATGCAGCACTTGAATCCAAAAAAATGAACCATAATATGCTTATGGCTCTCATAAAATATTTACAGAAGAAGAGATTTAGTTTTATTGAGAAGGCCACTGCAGAAGGAACTGAAGAAGTTGTTTTAGATGCAGTTGGGGATAACTTTGCATCTTACAATAGGCTTAAGAAAGCAAACAAGGGGCGTGGTAGTATACCTGTTAGTTCAGGAGCTCGGGAGATGGCTTCAATATTGGATACTGCTCTACTCCAAGCATTGCTTCTAACTGGACAATCTTCAGTGGCTTTAGAATTACTGAGAGATGTTAACTACTGTGATTTGAAAATATGTGAGGAAATACTTCGAAAAGGAAACCATCATGTTGCTTTATTAGAACTTTACAAGCACAACTCATTGCACCGGGAGGCTCTTGAACTTCTTCACAAATTGGTGGATGAGTCGAAATCTAGCCAGTCTGAAATTACACAAAGATTCAAGCCTGAGGATATCGTGGAGTATCTCAAGCCACTGTGTGGGACAGACCCCATACTTGTTCTAGAGTTCTCAATGCTTGTTCTTGAAAGCTGTCCATCTCAGACTATAGACCTCTTTCTGTCCGGGAATATTCCAGCAGATATGGTGAGCTCATATTTGAAAAAGCATTCTCCAAACATGCAAGCTAGGTACTTGGAGCTCATGCTTGCAATGAATGAGAATGCGGTATCTGGCAATTTGCAGAATGAAATGGTGCACATCTATCTTTCTGAAGTACTCGATTGGCATGCTGATTTAAGTGCTCAACAAAAATGGGATGAGAAAGATTATTCCCCAACAAGGAAAAAATTATTGACTGCCTTAGAGAGTATAGCAGGATACAGTCCAGAGGCTTTGCTAAAACGTCTTCCACCAGATGCTTTGTATGAAGAGCGTGCAATATTGTTGGGGAAAATGAACCAACATGAATTGGCATTATCTTTGTATGTTCATAAGCTTAATGCTCCAGAACTGGCATTGTCTTATTGTGATCGGGTCTACGAGTCTATCCATCAGCCATCTGCAAAATATTCCAGCAACATATACCTTGTGCTTCTGCAAATTTATTTGAATCCTCGAAGGACCACAGCAGGTTTCGAAAAGAGAATTAATAATCTATTATCCCCACAGAATAAAACCATTCCAAAACTTACTCCTACACCATCCATAAAAAGTAGAGGCCGAGGGTCAAAGAAAATTGCTTCAATAGAGGGTGCGGAGGACACAAAAGTTAGTTTAAGCAGCACTGACAGTGGCAGGAGTGATGGTGATGCAGATGAATATACTGAGGGTGGTTCTACTATCATGCTTGATGAGGTCCTTGATTTGTTGAGCCGCAGGTGGGATAGAATAAATGGAGCTCAGGCCCTTAAACTTTTACCAAAAGAGACGAAATTACAGGACCTGCTTTCATTTCTTGGGCCACTTCTGAGAAAATCCAGTGAAATGTACCGAAATTGTTCGGTGATAAAGAGCTTGAGACAAAGTGAGAACCTTCAGGTGAAAGATGAACTCTATAGTCAAAGGAAAGCAGGTGTGAAGATAACCGGTGATAGCATGTGTTCTCTGTGCCATAAGAAAATAGGGACTAGTGTTTTTGCAGTCTACCCAAATGGTAGCACTCTCGTGCACTTTGTCTGTTTCAGAGATTCTCAAAATATGAAAGCAGTGGGCAAAGGGTCTCAATTGAGGAAGCGATTATGA 2967 0.4402 MVHSAYDCLELVPQCPAKIESIESYASKLLLGCSDGSLRIFAPETESSSDGSKSYALEKNLVGFAKKPVISMAVVESREFLISLSESIAFHRLPSFETIAVITKAKGANVFCWDHRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVADTVKSMCWCGENICLGIRREYVILNASNGALSEVFTSGRLAPPLVVSLPSGELLLGKENIGVFVDQNGKLLPEGRICWSEAPLEVVIQKPYAIALLPRFVEIRSLRAPYPLIQTVVLRNVRHLCQSNDSLILALDNSIHGLFPVPLGAQIVQLTASGNFEEALSLCKLLPPEDSSLRAAKEGSIHIRYAHYLFDNGSYEEAMEHFLESQVEITYVLSLYPSIIIPKTTIVHEPEKLDIYGDASYLSRASSGVSDDMEPSSTSHMSESDENAALESKKMNHNMLMALIKYLQKKRFSFIEKATAEGTEEVVLDAVGDNFASYNRLKKANKGRGSIPVSSGAREMASILDTALLQALLLTGQSSVALELLRDVNYCDLKICEEILRKGNHHVALLELYKHNSLHREALELLHKLVDESKSSQSEITQRFKPEDIVEYLKPLCGTDPILVLEFSMLVLESCPSQTIDLFLSGNIPADMVSSYLKKHSPNMQARYLELMLAMNENAVSGNLQNEMVHIYLSEVLDWHADLSAQQKWDEKDYSPTRKKLLTALESIAGYSPEALLKRLPPDALYEERAILLGKMNQHELALSLYVHKLNAPELALSYCDRVYESIHQPSAKYSSNIYLVLLQIYLNPRRTTAGFEKRINNLLSPQNKTIPKLTPTPSIKSRGRGSKKIASIEGAEDTKVSLSSTDSGRSDGDADEYTEGGSTIMLDEVLDLLSRRWDRINGAQALKLLPKETKLQDLLSFLGPLLRKSSEMYRNCSVIKSLRQSENLQVKDELYSQRKAGVKITGDSMCSLCHKKIGTSVFAVYPNGSTLVHFVCFRDSQNMKAVGKGSQLRKRL 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01835 988 MobiDBLite consensus disorder prediction 398 416 - -
Pumo8g01835 988 Pfam CNH domain 27 273 IPR001180 -
Pumo8g01835 988 Pfam Vacuolar sorting protein 39 domain 1 495 603 IPR019452 -
Pumo8g01835 988 Pfam Region in Clathrin and VPS 624 753 IPR000547 GO:0006886|GO:0016192
Pumo8g01835 988 SUPERFAMILY WD40 repeat-like 28 172 IPR036322 GO:0005515
Pumo8g01835 988 MobiDBLite consensus disorder prediction 798 813 - -
Pumo8g01835 988 PANTHER CNH DOMAIN CONTAINING 1 976 IPR032914 GO:0016192
Pumo8g01835 988 MobiDBLite consensus disorder prediction 798 851 - -
Pumo8g01835 988 ProSiteProfiles Citron homology (CNH) domain profile. 16 278 IPR001180 -
Pumo8g01835 988 Pfam Vacuolar sorting protein 39 domain 2 862 970 IPR019453 -
Pumo8g01835 988 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 598 785 IPR000547 GO:0006886|GO:0016192
Pumo8g01835 988 MobiDBLite consensus disorder prediction 398 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01835 Pumo-Chr8 54588960 54595646 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01835 K20183 - gmx:100805342 1859.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01835 8 54588960 54595646 Pumo8g01835 8 54588960 54595646 ECH