Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01820 ATGCAAGAGCAGTCTTCTGTAAGAAAGGAGCAGGCAAGACAGGCTACTGAAGAACAGATTCAATCTCAGCAGCGTCAGACTGAGAGAGAGAGAGCTGAAATAGAAAGAGAAACTATTAGAGTTAAGGCAATGGCGGAGGCAGAAGGCCGAGCCCATGAAAAAAAATTGACTGAGGATCATAACAGGAGAATGCTTATAGAACGAATGCAAGGTGAAAGAGATAAATGGCTTGCTGCAATTAACACAACTTTTAGTCACATTGAAGGTGGTCTAAAGGCCTTATTGACCGATAGGGACAAATTGCTTATGACTGTTGGAGGAGCTACTGCACTAGCTGCAGGAGTATATACGACTAGAGAAGGTGCTAAAGTCACTTGGGGCTATATTAATCGGATTTTGGGGCAGCCATCACTGATCCGGGAATCATCCATGGCAAAATTTCCAGGGTCAAAGATCATTTCTCAAGCCAAAAATAAAGTTCTAAATAATAGTACTTTGGTTGGGGGAGAAAAGCCTATTGGGAGTAAAAATGGTCTTGGAAATGTAATCCTCCATCCATCGTTGCAGAGAAGAATAGAGCATCTTGCGCGTGCAACGTCAAATACCAAAGCCCATCAGGCACCATTTCGTAACATGCTTTTTTATGGGCCTCCTGGCACTGGTAAAACGATGGTTGCAAGGGAAATAGCTAGAAGATCGGGTTTGGATTATGCCATGATGACTGGAGGAGACGTTGCACCTCTGGGCGCACAGGCTGTTACCAAAATTCATGATATATTTGATTGGGCAAAGAAATCAAGAAAAGGCCTATTGCTTTTTATTGATGAGGCAGATGCTTTCCTTTGCGAGCGTAACAGCTCACACATGAGTGAAGCTCAGCGAAGTGCTCTAAACGCATTGCTGTTCAGAACTGGTGATCAGTCTAGAGACATAGTACTTGTCATTGCGACAAACAGACCAGGCGATCTTGACAGTGCAGTTACTGATCGCATTGATGAAGTGATCGAATTCCCACTTCCAGGAGAGGAAGAGCGTCTAAAGTTATTGAAGCTCTATTTAAACAAATATCTATGTGATGACAACAATGACTCCAAGGGGGGCTTCTTGCTGAAGAAGCAGCCCCAGAAGATTACTATAAAAGATTTATCCGAAGATGTTTTCAGAGAGGCTGCGAAGAAAACAGATGGATTTTCTGGCCGTGAGATCGCCAAACTCATGGCCAGCGTCCAAGCTGCTGTCTATGGGCGCCCAGACTGCATCTTGGATTCCCAGTTGTTTAGAGAAATTGTAGATTACAAGGTTGTGGAACATCATCAACGATTAAAACTAGCAGCTGAAGGTGGCCAACCTGGCCAAATATAA 1362 0.4376 MQEQSSVRKEQARQATEEQIQSQQRQTERERAEIERETIRVKAMAEAEGRAHEKKLTEDHNRRMLIERMQGERDKWLAAINTTFSHIEGGLKALLTDRDKLLMTVGGATALAAGVYTTREGAKVTWGYINRILGQPSLIRESSMAKFPGSKIISQAKNKVLNNSTLVGGEKPIGSKNGLGNVILHPSLQRRIEHLARATSNTKAHQAPFRNMLFYGPPGTGKTMVAREIARRSGLDYAMMTGGDVAPLGAQAVTKIHDIFDWAKKSRKGLLLFIDEADAFLCERNSSHMSEAQRSALNALLFRTGDQSRDIVLVIATNRPGDLDSAVTDRIDEVIEFPLPGEEERLKLLKLYLNKYLCDDNNDSKGGFLLKKQPQKITIKDLSEDVFREAAKKTDGFSGREIAKLMASVQAAVYGRPDCILDSQLFREIVDYKVVEHHQRLKLAAEGGQPGQI 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01820 453 MobiDBLite consensus disorder prediction 1 37 - -
Pumo8g01820 453 SMART AAA_5 208 341 IPR003593 GO:0016887
Pumo8g01820 453 PANTHER PUTATIVE ATP-ASE 1 447 - -
Pumo8g01820 453 MobiDBLite consensus disorder prediction 23 37 - -
Pumo8g01820 453 FunFam ATPase family AAA domain-containing protein 3 167 356 - -
Pumo8g01820 453 Pfam ATPase family associated with various cellular activities (AAA) 212 339 IPR003959 GO:0005524|GO:0016887
Pumo8g01820 453 Coils Coil 6 40 - -
Pumo8g01820 453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 435 IPR027417 -
Pumo8g01820 453 ProSitePatterns AAA-protein family signature. 311 330 IPR003960 GO:0005524|GO:0016887
Pumo8g01820 453 Gene3D - 156 357 IPR027417 -
Pumo8g01820 453 Pfam ATPase family AAA domain-containing protein 3, N-terminal 1 140 IPR021911 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01820 Pumo-Chr8 54427088 54431058 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01820 188 415 Miscellaneous Gene Families AT5G53170 29.289 1.25e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01820 K17681 - gmx:100777755 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01820 8 54427088 54431058 Pumo8g01820 8 54427088 54431058 ECH