Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01785 ATGTCTGGAACCATGTCTCCCAAAGGGTCTTTCAAGCAGAAAGCAATCAATGCCTCAAACATGCTGAGGAATTCTTTGACCAGAAAGGGTAGGCGAAGCAGCAAGGTCATGTCCGTTGAAATTGAGGATGTCCACGATGCTGAGGAGTTGAAAATAGTTGATGAGTTCCGTCAAGCTCTTATTTTGGACGAACTACTTCCTGCAAAACACGATGATTATCATATGATGCTTAGATTCCTGAAGGCCAGGAAATTTGATATTGAGAAAACGAAGCAAATGTGGTCTGAAATGCTCAAATGGAGGAAGGAGTTTGGTGCTGACACTATTACGGAGGACTTTGAATTCAAAGAAATTGATGAAGTCTTACAATATTATCCCCACGGACATCATGGCGTGGACAAAGAAGGAAGGCCTGTGTACATAGAGAGATTAGGCCAAGTCGATGCCGGGAAGATGATGCAAGTCACAACCATGGATCGCTATATCAAATACCACGTAAAGGAGTTTGAGAGGACATTCGATGTAAAGTTTGCAGCTTGTTCAATTGCTGCAAAGAAGCATATCGATCAAAGTACAACTATCCTGGATGTGCAGGGAGTGGGGCTTAAAAGCTTCAACAAACATGCTAGGGAACTCGTTACTCGCCTTCAGAAGATTGACGGTGACAACTATCCAGAGACCTTGAATCGCATGTTCATCATCAATGCAGGTTCTGGATTTAGAATACTGTGGAACACCGTAAAATCATTCCTTGATCCTAAGACCACGGCAAAAATCAATGTTCTTGGCAACAAGTATGACACCAAATTGCTAGAAATAATTGATGCAAGTGAGTTGCCTGACTTTTTAGGAGGTACTTGTACATGTGCTGATCAAGGAGGCTGTATGCGCTCTGATAAGGGCCCATGGAAGGATGCAGAAATCATGAAGATGGTTCAGAGTGGTGCTCACAAATGTTCAAAAAAAAGTGCGTCCCACGGCGAGGAAGAGAAAGAAAATTCTGAGGAACCCAAGACTCCCAAATTGGAGGCAAATCCCACCCCCCAGCTTTCTCCAGTTGCTGAAGAGGAGGTATGTTAA 1080 0.4343 MSGTMSPKGSFKQKAINASNMLRNSLTRKGRRSSKVMSVEIEDVHDAEELKIVDEFRQALILDELLPAKHDDYHMMLRFLKARKFDIEKTKQMWSEMLKWRKEFGADTITEDFEFKEIDEVLQYYPHGHHGVDKEGRPVYIERLGQVDAGKMMQVTTMDRYIKYHVKEFERTFDVKFAACSIAAKKHIDQSTTILDVQGVGLKSFNKHARELVTRLQKIDGDNYPETLNRMFIINAGSGFRILWNTVKSFLDPKTTAKINVLGNKYDTKLLEIIDASELPDFLGGTCTCADQGGCMRSDKGPWKDAEIMKMVQSGAHKCSKKSASHGEEEKENSEEPKTPKLEANPTPQLSPVAEEEVC 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01785 359 PRINTS Cellular retinaldehyde-binding protein signature 75 97 - -
Pumo8g01785 359 PRINTS Cellular retinaldehyde-binding protein signature 244 263 - -
Pumo8g01785 359 PRINTS Cellular retinaldehyde-binding protein signature 277 286 - -
Pumo8g01785 359 FunFam SEC14 cytosolic factor 105 317 - -
Pumo8g01785 359 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 9 323 - -
Pumo8g01785 359 SMART CRAL_TRIO_N_2 72 97 IPR011074 -
Pumo8g01785 359 MobiDBLite consensus disorder prediction 314 359 - -
Pumo8g01785 359 CDD SEC14 118 286 IPR001251 -
Pumo8g01785 359 SUPERFAMILY CRAL/TRIO N-terminal domain 45 113 IPR036273 -
Pumo8g01785 359 Gene3D - 105 317 IPR036865 -
Pumo8g01785 359 Pfam CRAL/TRIO domain 123 285 IPR001251 -
Pumo8g01785 359 Gene3D - 12 104 - -
Pumo8g01785 359 Pfam CRAL/TRIO, N-terminal domain 69 95 IPR011074 -
Pumo8g01785 359 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 117 291 IPR001251 -
Pumo8g01785 359 SMART sec14_4 117 288 IPR001251 -
Pumo8g01785 359 MobiDBLite consensus disorder prediction 321 339 - -
Pumo8g01785 359 SUPERFAMILY CRAL/TRIO domain 117 314 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01785 Pumo-Chr8 53970828 53974107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01785 53 282 Acyl Lipid Metabolism Gene Families AT5G47730 28.279 8.97e-20 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01785 K26544 - gmx:100796901 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01785 8 53970828 53974107 Pumo8g01785 8 53970828 53974107 ECH