Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01773 ATGCTTGGCGCCACTAGACTCGTCGTTAGATTCATTCATCGGAGGTTACGAACGGTGCGGCAAGTGCATGGAGATGGTGATGGCGAAGAAGCTCTACGTTTCTACAAGAGCAGAGGCCAACACATTCTCATCAACCCTCGAATTCTGGACACCATCGTTCGGAAATCCGCGATCAACCCCACCGACACAGTCCTCGAAATCGGACCCGGCACCGGCAACCTCACCCTCAAGCTTCTCGAAGCCGCGCACAAGGTCGTAGCCTTCGAGATCGACCACCGCATGATCCAGGTTCTCCAGAAGCGCGTCCTCCAACGTGGTCTCCAAGACAAGCTCAGGGTTATAGAAAGAGATGCAATGAGAGGCCCGTTCCCGCGGTTCGATCTTGTTGTGGCCAACATTCCTTACCGGATATCATCCCCTCTCGTGATTAAACTGGTGTACGGAGCGACGCCGTTTCGGAGTGCCACACTTCTGCTTCAGAAAGAGTTCGCTCGGAGGTTACTGGCTAGCCCCGGTGACGACTCTGGTGGGTTTAACCGGTTGTCGGTGAATTTGAAGCTTCTGGCTGACGTGGAGCTTGTAATGGACGTAAGCAAGAGGGACTTTCTCCCTTCCCCTAAAGTTGACTCTTCTGTGGTCATAATTCGCCCCAAGCCTCATGTTCCCAATGTGGATCTCCATGAGTGGAGGGCTTTCACCAGGACTTGTTTTAGTAGTAGCAGGAACAAGACACTTGGGGCATTGTTTAAGCTCAAGGGGAAAGTTTTTGAGTTGTTCAAAATCTCCAATGAAAATGATGAAGGAGGATTGAGCTTGTTCAAGGAAAAGCTTATCGGAGTGGTTAGAACTGGCGGGTTTGAAGATAAAAGGCCTGCAAAACTTTCTCTTGAGGATCTTCTGCTTTTGCTCTCTTTGTTCAATCAAGCTGGCATTTATTTTAATCACCGTGGACAGCTCAAGAGTGAAGATACGTTCGACTCCGACGATGAGTAG 993 0.5015 MLGATRLVVRFIHRRLRTVRQVHGDGDGEEALRFYKSRGQHILINPRILDTIVRKSAINPTDTVLEIGPGTGNLTLKLLEAAHKVVAFEIDHRMIQVLQKRVLQRGLQDKLRVIERDAMRGPFPRFDLVVANIPYRISSPLVIKLVYGATPFRSATLLLQKEFARRLLASPGDDSGGFNRLSVNLKLLADVELVMDVSKRDFLPSPKVDSSVVIIRPKPHVPNVDLHEWRAFTRTCFSSSRNKTLGALFKLKGKVFELFKISNENDEGGLSLFKEKLIGVVRTGGFEDKRPAKLSLEDLLLLLSLFNQAGIYFNHRGQLKSEDTFDSDDE 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01773 330 ProSitePatterns Ribosomal RNA adenine dimethylases signature. 64 91 IPR020596 GO:0000154|GO:0000179|GO:0008649
Pumo8g01773 330 PANTHER DIMETHYLADENOSINE TRANSFERASE 30 308 IPR001737 -
Pumo8g01773 330 NCBIfam 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA 33 304 IPR011530 GO:0000179|GO:0006364
Pumo8g01773 330 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 30 308 IPR029063 -
Pumo8g01773 330 FunFam rRNA adenine N(6)-methyltransferase 34 220 - -
Pumo8g01773 330 CDD AdoMet_MTases 63 142 - -
Pumo8g01773 330 Pfam Ribosomal RNA adenine dimethylase 34 250 IPR001737 -
Pumo8g01773 330 Gene3D - 223 315 - -
Pumo8g01773 330 SMART rADcneu6 48 219 IPR020598 GO:0000154|GO:0000179|GO:0008649
Pumo8g01773 330 Gene3D Vaccinia Virus protein VP39 34 220 IPR029063 -
Pumo8g01773 330 ProSiteProfiles rRNA adenine N(6)-methyltransferase family profile. 34 310 IPR001737 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01773 Pumo-Chr8 53838950 53840573 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01773 K14191 - gmx:100790908 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01773 8 53838950 53840573 Pumo8g01773 8 53838950 53840573 ECH