Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01771 ATGGCTTCCTCACTGTCTTCAGTTATCAACCAACCTCACATTGCTCAACGCCTCAAACTCCATCGTCCATCTTCTTTTGCCACTCTCACAATCTTCCACCACAAACACCAACAAAATGCTTCTTTTCCACACCCATATACCTCATCGCCACGCTTACGCCCTCTCAATCTCATCACTGCCTCCAGAACCTTCTCTCATTCCAGCACTATCCGTAGTCACTTCATCCCTCAAGCTACACTCACTGCTTCCGAAGCTCAACCCCGGCTTGTACCAGATACTGAAGTTCCTTCCCCTGCTCGTATATATCATGAGACTTATGGATGTCAAATGAACGTTAATGATATGGAGATTGTTCTGTCTATAATGAAAAAAGCTGGTTATGGTGAAATTGTGAGTGTTCCCGAGAGTGCAGAGATAATATTCATCAATACCTGTGCCATTAGAGACAATGCAGAACAGAAAGTATGGCAGAGGCTTAATTACTTTTGGTTTCTTAAGAGGCATTGGAAGAGCAACGTTGCTACTGGAAGGTCGCAATCCCTGCGCCCTCCAAAAGTAGTGGTTTTGGGATGTATGGCTGAGAGGTTAAAGGAGAAGATACTTGATGCAGACAAAATGGTTGATGTGGTCTGCGGGCCTGATGCTTATAGGGATTTGCCGCGATTACTGGAGGAGGTTGACTATGGTCAGAAAGGGATCAATACTCTCCTTTCGCTCGAGGAGACTTACGCTGATATTAATCCAGTTCGAATTTCAAAGAACTCGGTTACTGCATTTGTCTCGGTGATGAGGGGTTGCAACAATATGTGTTCGTTTTGTATTGTACCTTTCACTAGAGGGAGAGAGCGTTCACGTCCTGTGGAGTCAATTGTGAGAGAGGTGGCAGAGCTTTGGAAAGAGGGTGTGAAAGAAGTAACGCTTCTTGGCCAGAATGTGAACAGCTACAATGATGCATCTGAAATTGAGAGAGAGGTTGAATCAGGGTCCAATTGGAAACTTAGTGAAGGATTTTCCAGCATAGCTAAGGTCAAAAAAATGGGCTTAAGGTTTTCTGATCTACTGGATCGATTGTCCTCAGAATTTCCTGAGATGCGATTCAGATTCACGTCTCCACACCCTAAAGATTTTCCAGATGAATTGCTTTATCTAATGCGAGAAAGACATAATATATGCAAATTGATACATTTACCTGCACAAACTGGAAGTAGCACAGTACTTGAGAGAATGAGAAGAGGATATACACGAGAGGCTTACTTGGATCTTGTGCAAAAAATTCGGAGTATTATTCCTGATGTGGCTTTGAGCAGTGATTTCATTTGTGGATTTTGTGGAGAAACAGAGGAGGAGCATTCTGAGACATTGACTCTAGTAAAAGCTGTTGGTTATGATATGGCATTCATGTTTGCTTATAGCATGAGGGAGAAAACTCATGCCCACAGAAATTTTGTTGATGATGTTCCTGAGGAAATAAAGCAGAGGAGGCTAGCTGAACTTATTGAGGCTTTCCGCGAGAGCACAGGACAGTGTTTTGACTCTCAGATTGGAACTACACAGCTTGTATTAGTCGAAGGACCCAATAAAAGAGCACCAGATACTGAGCTTATGGGCAAGAGTGACAAGGGCCATCGAGTGTTGTTTGTGAATATGCCAATCCCAGACAGGGAAGATGTTAATACAAAGCGAAATCCTGTGGTTGGTGATTATGTTGAAGTCCGCATAACAAGATCTACGAGGGCATCACTCTTTGGTGAAGCACTTGCTATAACCAAACTGACTTCATTTTACAATAATCTGGATAAAGAAGCTGTTGCATGCAGCATGTAG 1824 0.4304 MASSLSSVINQPHIAQRLKLHRPSSFATLTIFHHKHQQNASFPHPYTSSPRLRPLNLITASRTFSHSSTIRSHFIPQATLTASEAQPRLVPDTEVPSPARIYHETYGCQMNVNDMEIVLSIMKKAGYGEIVSVPESAEIIFINTCAIRDNAEQKVWQRLNYFWFLKRHWKSNVATGRSQSLRPPKVVVLGCMAERLKEKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADINPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVREVAELWKEGVKEVTLLGQNVNSYNDASEIEREVESGSNWKLSEGFSSIAKVKKMGLRFSDLLDRLSSEFPEMRFRFTSPHPKDFPDELLYLMRERHNICKLIHLPAQTGSSTVLERMRRGYTREAYLDLVQKIRSIIPDVALSSDFICGFCGETEEEHSETLTLVKAVGYDMAFMFAYSMREKTHAHRNFVDDVPEEIKQRRLAELIEAFRESTGQCFDSQIGTTQLVLVEGPNKRAPDTELMGKSDKGHRVLFVNMPIPDREDVNTKRNPVVGDYVEVRITRSTRASLFGEALAITKLTSFYNNLDKEAVACSM 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01771 607 SMART MiaB 256 497 IPR006638 GO:0003824|GO:0051536
Pumo8g01771 607 NCBIfam MiaB/RimO family radical SAM methylthiotransferase 100 582 IPR005839 GO:0006400|GO:0016740|GO:0051539
Pumo8g01771 607 SUPERFAMILY Radical SAM enzymes 250 504 - -
Pumo8g01771 607 PANTHER CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 65 601 - -
Pumo8g01771 607 Pfam Uncharacterized protein family UPF0004 100 212 IPR013848 GO:0035596|GO:0051539
Pumo8g01771 607 CDD Radical_SAM 264 501 - -
Pumo8g01771 607 ProSiteProfiles TRAM domain profile. 511 587 IPR002792 -
Pumo8g01771 607 SFLD Radical SAM 99 591 IPR007197 GO:0003824|GO:0051536
Pumo8g01771 607 Pfam TRAM domain 511 586 IPR002792 -
Pumo8g01771 607 NCBIfam tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 101 584 - -
Pumo8g01771 607 Gene3D - 99 242 IPR038135 -
Pumo8g01771 607 ProSiteProfiles Radical SAM core domain profile. 252 508 IPR007197 GO:0003824|GO:0051536
Pumo8g01771 607 SFLD CDK5RAP1 99 591 - -
Pumo8g01771 607 SFLD (dimethylallyl)adenosine tRNA methylthiotransferase (MiaB-like) 99 587 IPR006463 GO:0006400|GO:0016740|GO:0051539
Pumo8g01771 607 Pfam Radical SAM superfamily 260 456 IPR007197 GO:0003824|GO:0051536
Pumo8g01771 607 ProSitePatterns Methylthiotransferase radical SAM domain signature. 260 280 IPR020612 GO:0051539
Pumo8g01771 607 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 99 228 IPR013848 GO:0035596|GO:0051539
Pumo8g01771 607 SFLD B12-binding domain containing 182 461 - -
Pumo8g01771 607 Gene3D tm_1862 like domain 254 512 IPR023404 -
Pumo8g01771 607 FunFam CDK5 regulatory subunit-associated protein 1 99 242 - -
Pumo8g01771 607 FunFam CDK5 regulatory subunit-associated protein 1 254 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01771 Pumo-Chr8 53819710 53823472 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01771 - - gmx:100799544 1125.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01771 8 53819710 53823472 Pumo8g01771 8 53819710 53823472 ECH